Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042586 [exp] 115 / 6e-33 ND / Lus10024524 [exp] 85 / 9e-21 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008292 pacid=23173723 polypeptide=Lus10008292 locus=Lus10008292.g ID=Lus10008292.BGIv1.0 annot-version=v1.0 ATGAGCATGGTCACTGTCCCTACTCCGCTGTTATTTCGTGGAATCCATAGGAGTGGCACGATTGGATGCATGCTAAGCCATATGGTCATAAGGTTGAGAA ACCCAATTACACGGAGGCTTCGACTTCAAAGCAAAAAGAATAAGTATCTTGCTCCCCTACCAGCAATCTTCCAGACTTATGTCCCGGTCGACTGGCTTGT TAAGGCAATTCCGGAAGAGCAGGGGACTAGTTCATCACTAGCCAATCCTCCCTCTGAAATCTCAGCGGCTGAGATCACGCGGTTCTTTCATTCTCCGTTT CTTTGCTCTAGAAAGCTCTCTCCGACTGGAGATGCTGAAGATGGGGCCGATTCATCCTCTACTCCAAAGAAATTAAAGAGAGAAGTGCCATTAACCGTCG CTGATTTTTCGGCACATGCTCTGGATCTGGGACTGATACCAGATGATATGTTGGACGAAAATCCAGACATGATCGTCGTCTCTGCGACCTTATCTACATC TATGATGGAAGGGGTTCGCCTGGATAGGCCCCTGGAGCTGGAATGA
AA sequence Show only first row Show all	>Lus10008292 pacid=23173723 polypeptide=Lus10008292 locus=Lus10008292.g ID=Lus10008292.BGIv1.0 annot-version=v1.0 MSMVTVPTPLLFRGIHRSGTIGCMLSHMVIRLRNPITRRLRLQSKKNKYLAPLPAIFQTYVPVDWLVKAIPEEQGTSSSLANPPSEISAAEITRFFHSPF LCSRKLSPTGDAEDGADSSSTPKKLKREVPLTVADFSAHALDLGLIPDDMLDENPDMIVVSATLSTSMMEGVRLDRPLELE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008292 [exp]	0	1
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10039573 [exp]	4.1	0.8691
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10005315 [exp]	5.3	0.8502
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10027927 [exp]	10.9	0.7844
AT5G62360			Plant invertase/pectin methyle...		Lus10031717 [exp]	12.6	0.8218
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10027467 [exp]	13.0	0.8375
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10012742 [exp]	13.1	0.8365
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10024833 [exp]	15.0	0.7860
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008996 [exp]	15.9	0.8012
AT5G52100		CRR1	chlororespiration reduction 1,...		Lus10027421 [exp]	18.5	0.8001
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009000 [exp]	19.9	0.7877

Compare expression of checked genes

Lus10008292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.