Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33250 602 / 0 Protein of unknown function (DUF604) (.1) AT4G23490 373 / 6e-124 Protein of unknown function (DUF604) (.1) AT5G41460 369 / 2e-122 Protein of unknown function (DUF604) (.1) AT4G11350 367 / 1e-121 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT1G07850 355 / 9e-117 Protein of unknown function (DUF604) (.1) AT1G01570 345 / 9e-114 Protein of unknown function (DUF604) (.1) AT2G37730 336 / 2e-109 Protein of unknown function (DUF604) (.1) AT4G00300 322 / 4e-101 fringe-related protein (.1.2) AT4G15240 310 / 4e-100 Protein of unknown function (DUF604) (.1) AT1G05280 299 / 6e-96 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033262 [exp] 782 / 0 AT1G33250 544 / 0.0 Protein of unknown function (DUF604) (.1) Lus10033260 [exp] 780 / 0 AT1G33250 546 / 0.0 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 380 / 1e-126 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10017514 [exp] 375 / 2e-124 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10032293 [exp] 370 / 2e-122 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 348 / 3e-114 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10027153 [exp] 314 / 2e-101 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1) Lus10039692 [exp] 306 / 2e-98 AT1G05280 476 / 3e-166 Protein of unknown function (DUF604) (.1) Lus10039693 [exp] 287 / 1e-91 AT4G15240 495 / 1e-173 Protein of unknown function (DUF604) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G147300 [exp] 647 / 0 AT1G33250 648 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G454600 [exp] 624 / 0 AT1G33250 629 / 0.0 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 400 / 7e-135 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 379 / 2e-126 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 377 / 9e-126 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 372 / 8e-124 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 342 / 7e-112 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 335 / 2e-109 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.017G039600 [exp] 328 / 4e-107 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1) Potri.010G199900 [exp] 323 / 1e-104 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04646 [flax] [poplar] DUF604 Protein of unknown function, DUF604
Representative CDS sequence Show only first row Show all	>Lus10008293 pacid=23173720 polypeptide=Lus10008293 locus=Lus10008293.g ID=Lus10008293.BGIv1.0 annot-version=v1.0 ATGTCCATAGACTGCCGCATTTCTTTCTACCCTCAAAACCTACTCCCACCACCACTCCCTCGACCCCGTGACCGCCGATGGCTCGACAGCTACTTAGCCA CCGCCTTGCTTCTCACCGCTGCTCTCATCCTTTCCACCGCCGCCTGCCTCTCTCTCGTCTTCTCCAGACCAGCCACCCCTTGTTCCCGCCGCCGCAACCT CCCCGACGGTTTCACAAAAACCACCACCGCCGCCGCCTCTTCCGTCCAGTACCAATCGCCGCCTCCACTCGCTGGATTCCCCCGCAACCTCTCGCGTGGT AGTAGTCAAGATCACTTGACGCTGGAACACTTGGTGTTCGGTATAGCCGGATCTTCGCAGCTATGGGAGCGGCGGAAGGAGTTCATTCGTCTCTGGTGGC GTCCCGACGAGATGCGTGGCCACGTTTGGGTCGAAGAGAAGCTCGCCGCCGTTGAATCGGACGAATCGCTGCCTCCAATCATGGTATCTGAGGACACGTC GCGTTTTCGTTATACGCATCCCTCGGGCCATCCTTCTGGACTTCGGATCTCTCGGATCCTAGCCGAGAGCTTCCGCCTCGGACTCCCCCATGTACGGTGG TTCGTCCTCGGAGACGACGATACAATTTTCAACCCTGATAATTTGGTTGCGGTTCTGAGTAAGTATGATTCCTCTGAGATGGTGTATATTGGATCTCCTT CCGAGAGTCATTCTGCCAACAATTATTTCAGCCATTCCATGGCCTACGGCGGCGGTGGGATTGCCATTAGCCGTCCACTTGCCGCGGCTCTCTCAAACAT TTTAGATGACTGTATAGATAGATACCATGGCTTCTACGGCAGCGACGATCGACTCCATGCTTGCATTTCCGAGCTCGGCGTTCCTTTGTCAAGAGAGCAT GGATTCCACCAGTTTGACATCAGAGGCAGTGCACTTGGTCTACTATCTGCCCACCCGATTGCACCCTTTGTCTCGATTCACCATGTCGAAGCTATTGATC CACTTTACCCGGGTCTAACCAAGCTAGAGAGTCTCAGGCTCTTCACAAAGGCCATGAGTCTTGATCCCACTAGCTTCTTGCAGAGATCGATTTGCTACGA CCATGGTCACCACCTTTCCTTTGTTGTCTCGATTGGGTATGTTGTACAGGTGTTCCCTGGCATTGTGCTTCCGCGTGTTCTTGATCGCTCGGAGAAGTCC TACTCGGCGTGGAACGGTAAGACTAAGAGGAACGAGTTCGATATGGATACCCGAGATCCTTACAAATCTTATTGCAAGAGGCCCATCTTCTTTTTCTTAA AAGATGCGGTTAAACAGGATAACGATACGTTGGGGACGTATCAACGAGCTAAGCTGAACGATGATTTGAAAAGAAGAGTCTTTTGCTTTCCGAAATCCAG TCCTCTCCCTCATGTGGCTAGCATTCGCGTGTTGGCTCGTCCATTGAGGAAGAATTGGCACCTGGTTCCCCGACGCCTCTGTTGCAGACTAGACTATGCA AGTAATGAAATAGTTGTTGCAGAGTGTGAAAAGGGATCACGAGGCTCTGTCACAGATTCGACACAAGTGATTAGCAGACCTTCATGA
AA sequence Show only first row Show all	>Lus10008293 pacid=23173720 polypeptide=Lus10008293 locus=Lus10008293.g ID=Lus10008293.BGIv1.0 annot-version=v1.0 MSIDCRISFYPQNLLPPPLPRPRDRRWLDSYLATALLLTAALILSTAACLSLVFSRPATPCSRRRNLPDGFTKTTTAAASSVQYQSPPPLAGFPRNLSRG SSQDHLTLEHLVFGIAGSSQLWERRKEFIRLWWRPDEMRGHVWVEEKLAAVESDESLPPIMVSEDTSRFRYTHPSGHPSGLRISRILAESFRLGLPHVRW FVLGDDDTIFNPDNLVAVLSKYDSSEMVYIGSPSESHSANNYFSHSMAYGGGGIAISRPLAAALSNILDDCIDRYHGFYGSDDRLHACISELGVPLSREH GFHQFDIRGSALGLLSAHPIAPFVSIHHVEAIDPLYPGLTKLESLRLFTKAMSLDPTSFLQRSICYDHGHHLSFVVSIGYVVQVFPGIVLPRVLDRSEKS YSAWNGKTKRNEFDMDTRDPYKSYCKRPIFFFLKDAVKQDNDTLGTYQRAKLNDDLKRRVFCFPKSSPLPHVASIRVLARPLRKNWHLVPRRLCCRLDYA SNEIVVAECEKGSRGSVTDSTQVISRPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33250			Protein of unknown function (D...		Lus10008293 [exp]	0	1
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031909 [exp]	1.7	0.9225
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10009235 [exp]	3.7	0.9134
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Lus10020619 [exp]	5.3	0.9084
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Lus10001713 [exp]	6.5	0.9085
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10017412 [exp]	7.7	0.9032
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10038004 [exp]	7.7	0.9053
AT3G18600			P-loop containing nucleoside t...		Lus10009616 [exp]	7.9	0.8998
AT4G22900			Protein of unknown function (D...		Lus10001191 [exp]	9.5	0.8930
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031337 [exp]	10.6	0.8984
AT3G21400			unknown protein		Lus10037507 [exp]	11.2	0.8753

Compare expression of checked genes

Lus10008293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.