Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10430 430 / 4e-151 TMPIT-like protein (.1.2.3) AT1G33230 419 / 5e-147 TMPIT-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033263 [exp] 556 / 0 AT4G10430 380 / 2e-131 TMPIT-like protein (.1.2.3) Lus10010151 [exp] 507 / 0 AT4G10430 501 / 4e-179 TMPIT-like protein (.1.2.3) Lus10017356 [exp] 436 / 2e-153 AT4G10430 429 / 4e-151 TMPIT-like protein (.1.2.3) Lus10033261 [exp] 426 / 2e-150 AT1G33230 327 / 3e-112 TMPIT-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G147500 [exp] 467 / 2e-165 AT1G33230 486 / 4e-173 TMPIT-like protein (.1) Potri.001G454400 [exp] 459 / 2e-162 AT1G33230 526 / 0.0 TMPIT-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07851 [flax] [poplar] TMPIT TMPIT-like protein
Representative CDS sequence Show only first row Show all	>Lus10008294 pacid=23173707 polypeptide=Lus10008294 locus=Lus10008294.g ID=Lus10008294.BGIv1.0 annot-version=v1.0 ATGGACGCTGGCCGAAATTCTACGCCAGATGAATCGGCGAGCAACGTGGAACAAGAGGCGGGGAGAGTAGTGGAAGAGGCGAAGCAGCTTCAGGAATCGG CTGCCTCTCACATCTATACTTCCTCCAACGATGAACAATCGCTCCGCCAACGCGCTAACTCCGTCGACTCCTCAATCCACCGCTGCCGTTCTCGTCTTCA CTCCCTCGTCTCTCGCCGCCTCGTCGATGCCAAGCTCGCTGACAAGCTGGAGGAGGAGTTGCAGAGAGCTAAATGCATGATTTCCGATGGGGAAGCAGCT GCGTTTCTTCCTTCCAAGGGCCATGGAAGATTTCTCAGGATGTTTCTGGGCCCTATTAACGTACAAGCGTCTCGAAAAGACGTCCAATTGAAGGTTAAAG AAGAGTACAACAGTTATAGGGATAGAACTGCCCTTCTATTTCTGCTGTTCCCATCAGCTCTACTGATTATGAGGTCTTGGGTGTGGGACGGGTGCTTGCC ATCGTTCCCTGTTCAACTGTATCAGTCATGGTTATTATTCCTCTATACCGGGTTGGCGTTGCGAGAAAACATACTGAGGGCCAATGGAAGTGATATCCGT CCCTGGTGGATCTACCATCACTATTGTGCTATGATTATGGCCTTAGTAAGCCTTACATGGGAGATAAAAGGACAGCCCAATTGTGCCCAGAAACAGAGAG GGGTAGAACTCTTCTTGCAATGGGCTATGATGCAAGGAGTCGCAATGCTTTTACAGAACAGATACCAGCGACAGAGACTTTACACTCGAATTGCATTGGG GAAGGCAAAGAGAATGGATGTAGTATGGGGAGAAACTGCTGGTGTAGATGGCCAATTGTGGTTGTTGGCACCTATTCTCTTTATTTTACAGGGGTTTGAG GCATATGTTGGATTGCAGTTGCTGAGAACTGCATTGGCGAGGGTTGTCACCGAGTGGCAGGTGCAGTCTACTAACAGGCGAGATCTGGTGATAGGTAATA TTCTGCGGAATCCTGTTGGTGTTCATGGCTGCTGGAAATTTCTCAAACACGGTACAGACACTGCTGGTGAAATTGAGGTTCAAAGCAAAGATGAAAATGA GTAA
AA sequence Show only first row Show all	>Lus10008294 pacid=23173707 polypeptide=Lus10008294 locus=Lus10008294.g ID=Lus10008294.BGIv1.0 annot-version=v1.0 MDAGRNSTPDESASNVEQEAGRVVEEAKQLQESAASHIYTSSNDEQSLRQRANSVDSSIHRCRSRLHSLVSRRLVDAKLADKLEEELQRAKCMISDGEAA AFLPSKGHGRFLRMFLGPINVQASRKDVQLKVKEEYNSYRDRTALLFLLFPSALLIMRSWVWDGCLPSFPVQLYQSWLLFLYTGLALRENILRANGSDIR PWWIYHHYCAMIMALVSLTWEIKGQPNCAQKQRGVELFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLAPILFILQGFE AYVGLQLLRTALARVVTEWQVQSTNRRDLVIGNILRNPVGVHGCWKFLKHGTDTAGEIEVQSKDENE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10008294 [exp]	0	1
AT1G60995			unknown protein		Lus10014638 [exp]	3.7	0.9217
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10032471 [exp]	4.1	0.9292
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Lus10036464 [exp]	8.0	0.8993
AT2G14255			Ankyrin repeat family protein ...		Lus10040833 [exp]	9.2	0.9069
AT3G63500			Protein of unknown function (D...		Lus10016399 [exp]	11.4	0.8711
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10008686 [exp]	16.6	0.9136
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	19.0	0.9022
AT5G45360			F-box family protein (.1)		Lus10022369 [exp]	19.0	0.9029
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Lus10023104 [exp]	24.5	0.8481
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10035230 [exp]	24.6	0.8991

Compare expression of checked genes

Lus10008294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.