Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78840 67 / 2e-13 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G02700 66 / 5e-13 F-box/RNI-like superfamily protein (.1) AT3G28410 64 / 2e-12 F-box/RNI-like superfamily protein (.1) AT3G58860 64 / 2e-12 F-box/RNI-like superfamily protein (.1) AT5G44950 64 / 2e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G02930 63 / 4e-12 F-box/RNI-like superfamily protein (.1) AT1G52650 62 / 9e-12 F-box/RNI-like superfamily protein (.1) AT3G58880 59 / 1e-10 F-box/RNI-like superfamily protein (.1) AT4G13960 59 / 1e-10 F-box/RNI-like superfamily protein (.1) AT3G18150 59 / 2e-10 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024702 [exp] 158 / 5e-48 AT5G02930 70 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10032255 [exp] 149 / 7e-44 AT5G02930 85 / 6e-18 F-box/RNI-like superfamily protein (.1) Lus10006513 [exp] 140 / 2e-40 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10027244 [exp] 132 / 3e-37 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10038967 [exp] 134 / 5e-37 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10020292 [exp] 127 / 1e-35 AT1G60410 76 / 9e-15 F-box family protein (.1) Lus10027258 [exp] 125 / 2e-35 AT4G03220 74 / 9e-15 Protein with RNI-like/FBD-like domains (.1) Lus10014161 [exp] 124 / 2e-34 AT5G53840 64 / 4e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10023567 [exp] 109 / 2e-30 AT4G03220 59 / 3e-10 Protein with RNI-like/FBD-like domains (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 87 / 1e-20 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 75 / 3e-16 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 71 / 8e-15 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.001G322900 [exp] 63 / 5e-12 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G104200 [exp] 61 / 3e-11 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 61 / 3e-11 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 61 / 4e-11 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.015G002001 [exp] 60 / 5e-11 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G121500 [exp] 59 / 2e-10 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.011G024300 [exp] 58 / 3e-10 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10008295 pacid=23173698 polypeptide=Lus10008295 locus=Lus10008295.g ID=Lus10008295.BGIv1.0 annot-version=v1.0 ATGAAGAGAAGTAAAAGGATCAGCAAGGATTCTGAAGGAATCGACCTGCTAAGTGATCTTCCTGACGGTGTTTTGCATCACATTCTTTCCTTTCTCGACA CTAAATCTTCGATTCAAAGCTGCATTCTATCGAGGAGGTGGAGATGTCTGTGGAAATATGTTCCCGTTCTCACATTCCGCACAAGCTCGGGCGGGAGTGA CCTGGATTTCGGGAAATATGGGAATCAAGTTCTATCTCTTCGTTTGGATTGTAATGTCTACAAGATTACGTGTGAATTCAATACACCATATAGGATGGAT CTGTTTGATAGGAGCATGAAATATGGGGCCTCTCAAGGTGTCCAACACTTATTTTTGGCTGCCAATTTGTATGGCGGTGTAGATCTGAAGGCCAGTCCAG CTCTTTGCAAGTGCTATCAATCTCTAAAAGTTCTGGAATTAGAACAAACATTTTTAGACGATACAGTCAGTTGGATTGTTTTCTGGTTTACAACAACTTG A
AA sequence Show only first row Show all	>Lus10008295 pacid=23173698 polypeptide=Lus10008295 locus=Lus10008295.g ID=Lus10008295.BGIv1.0 annot-version=v1.0 MKRSKRISKDSEGIDLLSDLPDGVLHHILSFLDTKSSIQSCILSRRWRCLWKYVPVLTFRTSSGGSDLDFGKYGNQVLSLRLDCNVYKITCEFNTPYRMD LFDRSMKYGASQGVQHLFLAANLYGGVDLKASPALCKCYQSLKVLELEQTFLDDTVSWIVFWFTTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78840			F-box/RNI-like/FBD-like domain...		Lus10008295 [exp]	0	1
					Lus10008296 [exp]	1.0	0.9186
					Lus10011725 [exp]	2.8	0.8670
AT2G27590			S-adenosyl-L-methionine-depend...		Lus10020593 [exp]	5.2	0.7798
					Lus10031895 [exp]	7.3	0.8128
AT2G21200			SAUR-like auxin-responsive pro...		Lus10008992 [exp]	14.7	0.7904
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10005762 [exp]	28.6	0.7690
AT4G34180			Cyclase family protein (.1)		Lus10031454 [exp]	29.1	0.7261
AT5G54090			DNA mismatch repair protein Mu...		Lus10015589 [exp]	31.0	0.7841
					Lus10007677 [exp]	31.4	0.7381
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10013728 [exp]	32.2	0.7511

Compare expression of checked genes

Lus10008295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.