Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43130 352 / 4e-108 TAF4, TAF4B TBP-associated factor 4B, TBP-associated factor 4 (.1.2) AT1G27720 290 / 5e-86 TAF4b TBP-associated factor 4B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033265 [exp] 1461 / 0 AT5G43130 404 / 1e-127 TBP-associated factor 4B, TBP-associated factor 4 (.1.2) Lus10007763 [exp] 1165 / 0 AT5G43130 576 / 0.0 TBP-associated factor 4B, TBP-associated factor 4 (.1.2) Lus10018701 [exp] 1118 / 0 AT5G43130 596 / 0.0 TBP-associated factor 4B, TBP-associated factor 4 (.1.2) Lus10038047 [exp] 226 / 1e-67 AT5G43130 145 / 1e-39 TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G119900 [exp] 663 / 0 AT5G43130 634 / 0.0 TBP-associated factor 4B, TBP-associated factor 4 (.1.2) Potri.014G018000 [exp] 652 / 0 AT5G43130 605 / 0.0 TBP-associated factor 4B, TBP-associated factor 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12174 [flax] [poplar] RST RCD1-SRO-TAF4 (RST) plant domain CL0012 [flax] [poplar] Histone PF05236 [flax] [poplar] TAF4 Transcription initiation factor TFIID component TAF4 family
Representative CDS sequence Show only first row Show all	>Lus10008297 pacid=23173705 polypeptide=Lus10008297 locus=Lus10008297.g ID=Lus10008297.BGIv1.0 annot-version=v1.0 ATGCATTCCGGTGCTGACGTCGAGGCTTTCCAGGCTGCTCTCAATCGGGATATCGAAGGCGACAAAAATCCCACTCCCCAGACACATGATTCGGCTTTTC CAAATGAAGGGAACCGAGAGTCGTCTCAGCCGCTTCAAAGCTGGCCGTCAATTGGACAAGGTGGAATTCCTGCGGGTTCAAGCAATCAGGGGCTACTTAA TTTATCACATGCACAACAGTTATCACACCAACAACAGCAATCATCTATGGTGCTCGATCAACGCTCATCTGTAGCTGAGAAACAGCAGCAACTTAATGAT GTGTCACAGGGACAAAATGACCCTCCAACGATACATCAAAACCAACCCCAAGACAATCTTCAACAGGTAAAGGTGGAACAGGCCGCTACTCAAACTCCCG GGACTACTGTGATTTCAATGTCTGATAAAAGTCCTGCTCCAATATCTGAGCCTGGGAAATCACAAAACCCTGCTGCTGAATCCCAGTACCCGAAGTTCCC TAGGATGCCCCAACAAATGACAGGCACAGAACCGGTCGTGAGTCCAAATAATCAGGGAAAGCAAATACCATTTGTGATGTTGTTCCCTGCCTTAAAACCC CATCTTGATAAGGACAAAGAGATGCAGCTCGGGATCATCTTCAATAAACTAAAGAGAAATGAAATCCCAAAAGATCAATTTGTCAGGCATTTGAAGAATA TCGTAGGGGATCAAGTGCTGAAGCTGGCAATTTCTCAGTGGCAATCACAGCATGGACCCAAACAATCCCAGTTACAGTCTCAAGCTTTAGCTCGTCAACA AAATGCCAGGATACCCACCAGTTCTAATCCCTCTCAACTTCCTGTTGCCCATCCATTTGCTCCTCATCAGAAGGGACCAAGTACTTCTCCAGACACGGCT TACAATGCTCATTCATCAGTCAAACCGCAGGCTGATGGTTCAGCTCATGTTCTTACCATGACCGGTAATCCCAAAACCCAACAAGTTGTTTCTCATGCAG TCAACTTTAGCCGAATGACTTCACCCAGTGCAAACATAGTCAACCAACATAGAGATTCCTCTTCAGTTCCAACCCAAGGACTCAACAAGCAAAACCAACA ACATTCACACTTTCCACAGACTTCCTTTCCCATGTATGGTGGTACTGGAAGTAATTTCCCCACATATTCTGGTACAGCAAAAAATGCTTCAGGCGCATCT ATGAATCCACATCATCAAGGAATTGGCATAAATCAAGTAGGAAAACCTAGCCAGGCAATGAGCACCCTCAATAGTGGCCCTATCTCTCCTTATCCTCCTA GCAAGACAACATTGCAGCAAAATCCAGTTCATTGGCAAACATCAACAAACAAAGACCAAAGTCGCACCCCATTTTCTCCTATGAATTCTGTAAAACAGGA AGTTGTTGAGCGGGCTGGTGAGCAGTCACAGAAATTGCAGTTTGGTAACCATCGTGAGTTATGGGCTGGTGCTGCGCAAGGAAACACAAATTTGGGGAGT TTCAAAGATGATTCAGATAAGCCTCCTTCAAGTGTCGGTTCCTTGAAATCCTCTGATACTGCACGCTCAAATTTAGCTGCTCCTTCCAACCCGACTCAGT TGGACCATAATACTCAGGCTGCCTCCAGGATTCCTCCTTCTTCTGCACCGAATGCAAGAACTCCTCCCAAGAAACCTTCTGTTGGGCAAAAAAAGCCACT AGAAGCTCTTGGATCTTCACCGCCAGCAGCAAGTAAGAAGCAGAAGGTTTCTGGTGCATTTTTGGATTCGAGCATTGAACAACTAAATGATGTCACTGCT GTCAGTGGAGTTGATCTTAGGGAAGAGGAAGAACAGTTATTCTCTGCGACCATGGAGGACGGTCGAGTTTCTGAAGCATCTAGAAGAGTTGTACAAGAAG AAGAAGAGAGGCTGCTTTTGCAGAAAACTCCTCTTCAGAAAAAAGTGGCTGAGATCATGGTCAAGTGTGGTCTGAAGAATTTCAGCAGTGATGTCGCAAA ATGCTTGTCCTTGAGTGTGGAGGAAAGAATGCGAAGTTTGGTCAGTAACATGGTCAGAATGTCTAAACAGAGGATTGACTCAGAGAAATCCAGACACAGG ACAGTAGTTACCTCTGATGTCCGGCAACAACTTATGACAATGAACCAGCAAGCTAAGTCTGAATGGGAGAAAAAACAGGCCGAAGCAGAAAAGCTCTGGA GAGTAAATGAACCCGAGGCTGATGGTGGATCCGAAGCTGACAGGGACAAAGACGATGCGAAAGGAAAAGCCAGCAAGGTGAACAAAGAGGAGGATGACAA AATGAGAACAACTGCTGCAAATGTTGCTGCCCGAGCTGCTGTTGGGGGAGATGACATGTTGTCGAAATGGCAACTCATGGCCGAGCAAGCTCGGCAGAAA CGTGAAGGGGTTCCAGATTCTGCATCCTCTTCTCAATTCGCGTCAGATGGAAGCCATAAGCCTCAGACGTTGTCTGGAAGGAACAACAATCAAGACGGAC AAAAGAACTCTGTTTCTGCATCCTGGAGTGGTAGAAACCTTGGGAGGAACAGCGGAGCAGCAGCTCAGTTGAGGGAGGATCGGACTTTATCTATCAAGGA TGTGATTGCAGTGATGGAACGAGAGCCCCAGTTGTCGAAGTCTACGTTGATTTATAAACTCTATGAGAAGATTCGGTTGGATCGGCCACCCGAATGA
AA sequence Show only first row Show all	>Lus10008297 pacid=23173705 polypeptide=Lus10008297 locus=Lus10008297.g ID=Lus10008297.BGIv1.0 annot-version=v1.0 MHSGADVEAFQAALNRDIEGDKNPTPQTHDSAFPNEGNRESSQPLQSWPSIGQGGIPAGSSNQGLLNLSHAQQLSHQQQQSSMVLDQRSSVAEKQQQLND VSQGQNDPPTIHQNQPQDNLQQVKVEQAATQTPGTTVISMSDKSPAPISEPGKSQNPAAESQYPKFPRMPQQMTGTEPVVSPNNQGKQIPFVMLFPALKP HLDKDKEMQLGIIFNKLKRNEIPKDQFVRHLKNIVGDQVLKLAISQWQSQHGPKQSQLQSQALARQQNARIPTSSNPSQLPVAHPFAPHQKGPSTSPDTA YNAHSSVKPQADGSAHVLTMTGNPKTQQVVSHAVNFSRMTSPSANIVNQHRDSSSVPTQGLNKQNQQHSHFPQTSFPMYGGTGSNFPTYSGTAKNASGAS MNPHHQGIGINQVGKPSQAMSTLNSGPISPYPPSKTTLQQNPVHWQTSTNKDQSRTPFSPMNSVKQEVVERAGEQSQKLQFGNHRELWAGAAQGNTNLGS FKDDSDKPPSSVGSLKSSDTARSNLAAPSNPTQLDHNTQAASRIPPSSAPNARTPPKKPSVGQKKPLEALGSSPPAASKKQKVSGAFLDSSIEQLNDVTA VSGVDLREEEEQLFSATMEDGRVSEASRRVVQEEEERLLLQKTPLQKKVAEIMVKCGLKNFSSDVAKCLSLSVEERMRSLVSNMVRMSKQRIDSEKSRHR TVVTSDVRQQLMTMNQQAKSEWEKKQAEAEKLWRVNEPEADGGSEADRDKDDAKGKASKVNKEEDDKMRTTAANVAARAAVGGDDMLSKWQLMAEQARQK REGVPDSASSSQFASDGSHKPQTLSGRNNNQDGQKNSVSASWSGRNLGRNSGAAAQLREDRTLSIKDVIAVMEREPQLSKSTLIYKLYEKIRLDRPPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10008297 [exp]	0	1
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10041725 [exp]	1.7	0.8333
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10022055 [exp]	2.6	0.8470
AT2G16940			Splicing factor, CC1-like (.1....		Lus10027830 [exp]	4.9	0.8049
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Lus10000866 [exp]	7.5	0.8204
AT4G22960			Protein of unknown function (D...		Lus10014145 [exp]	10.4	0.7580
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Lus10024952 [exp]	10.8	0.7993
AT1G13030			sphere organelles protein-rela...		Lus10006228 [exp]	11.4	0.8402
AT1G29750		RKF1	receptor-like kinase in flower...		Lus10015239 [exp]	12.0	0.7567
AT5G03450			Transducin/WD40 repeat-like su...		Lus10013821 [exp]	13.2	0.8085
AT5G25480		AtDNMT2, DNMT2	DNA METHYLTRANSFERASE 2, DNA m...		Lus10020155 [exp]	13.7	0.7645

Compare expression of checked genes

Lus10008297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.