Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10440 946 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 943 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 743 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 732 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G26850 708 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 691 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 610 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G31850 521 / 3e-179 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G19120 509 / 1e-174 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G00740 471 / 1e-159 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010152 [exp] 1055 / 0 AT1G33170 952 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10017357 [exp] 1055 / 0 AT1G33170 948 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10005764 [exp] 749 / 0 AT2G45750 811 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003014 [exp] 714 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036747 [exp] 709 / 0 AT1G26850 1042 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10011045 [exp] 708 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10012830 [exp] 706 / 0 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10037180 [exp] 704 / 0 AT1G26850 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10030479 [exp] 704 / 0 AT1G26850 1057 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G147600 [exp] 1017 / 0 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 1003 / 0 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G139000 [exp] 788 / 0 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 783 / 0 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 767 / 0 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G154400 [exp] 746 / 0 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 738 / 0 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.003G087600 [exp] 738 / 0 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G094100 [exp] 722 / 0 AT1G26850 1031 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.008G147800 [exp] 712 / 0 AT1G26850 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10008298 pacid=23173708 polypeptide=Lus10008298 locus=Lus10008298.g ID=Lus10008298.BGIv1.0 annot-version=v1.0 ATGGGAGGAAAGGACCATGGTGGATCATCACACCAACTAGAATCGAGAAGGAAGCGCCTGAGCTTTATCCTCGGGGTGACCGGCCTCTGTGTACTATTCT ACGTGTTAGGATCTTGGCGGACCACCACCACCGTGCCATCCTCCACCCCGTTCTCGGTACAAACCAAAGCCAGTTGCGACCCCGACACCAATTCTTCTTC ATCACCTCCAGTCGGCAGGTTAGACTTTGAACCACATCACCAGATCGAGATCGAAAACTCTGAAAAAAAAACTGAGGACTTCCCACCATGTGAGATGTCG TACAGCGAGTACACCCCTTGCCAGTACCCGCCGAGGGGGAGGAAGTTCGACAGGGACATGATGAAATACAGGGAGAGGCATTGCCCTGCCAAAGAAGAGC TCTTGTTCTGCCTGATACCGGCTCCGCCGAATTACAAGACGCCTTTCAAATGGCCTCAGAGCCGCGACTATGCATGGTACGACAACATTCCTCACAAAGA GCTGAGCATTGAGAAGGCCGTTCAGAATTGGATCCAAGTTGAGGGGGACAGGTTCAAGTTCCCCGGAGGTGGCACTATGTTTCCCCGTGGCGCCGATGCT TATATTGATGACATTAAATATCTCATCCCTCTTACCGGAGGCACCATCCGTACTGCAGTCGACACTGGTTGTGGCGTGGCGAGTTGGGGGGCATATTTGC TGAAGAGGGACATCCTGGCGATGTCATTTGCGCCAAGGGATACCCACGAAGCGCAGGTACAGTTCGCATTGGAGAGGGGAGTTCCAGCTATGATTGGTGT AATGGGATCCCAGAGGCTTCCTTATCCTGCAAGGGCTTTCGACATGGCTCACTGCTCTCGCTGCTTGATACCTTGGTTTAGTAACGATGGGCTGTATTTA ATTGAAGTGGACAGGGTACTGAGACCAGGTGGCTACTGGATTCTGTCTGGGCCACCAATTAACTGGAAGACGCACTGGAAAGGGTGGGAAAGAAGTCAGC AGGATCTCAAACACGAACAGGACGCCATTGAGGATGTCGCCAAACGGCTTTGCTGGAAGAAAGTGGCGGAGAAGAAAGATCTCTTGATTTGGCAGAAACC CATTAACCACTTCGAATGTGTTCGGAATCGCAAGGTGTACAAGACTCCTCACATGTGCAAGTCCGACAATCCTGATGCATCATGGTACAAGAACATGGAA ACTTGCATAACTCCACTCCCGGAGGTAAACGACGACTCTGGAGACCAAGTTGCCGGAGGCGCGCTGGAGAAATGGCCGGCACGTGCCTTTTCAGTCCCGC CTAGGATCGCTAGGGGTACGATACCGGGAATCACAGCCGAGAAGTTCAAGGAAGACAACGAAGTCTGGAAGGAGAGGCTAAACCACTACAAGCAAATCGT CAACCCCTTAGTGCAAGGGTGGTACCGTAACGTCATGGACATGAACGCTTACCTAGGGGGTTTCGCAGCCGCATTGATCAAATACCCCGTTTGGGTCATG AACGTGGTCCCTTCCGACTCGAACCACGACACCCTCGGAGCCATCTACGAGAGAGGGTTCGTCGGTACGTATCAAGATTGGTGCGAGGCATTCTCGACTT ATCCCAGGACGTACGACCTCATCCATGCTGGTAATGTCTTTAGCATCTACCAAGACAGGTGCGACATTGCCGTGATCTTGCTGGAGATGGATCGAATTCT GAGGCCGGAAGGGACGGTCGTATTTAGGGATACGGTAGAGGTGTTGGTGAAGGTACAGAGCATTACGAACAGAATGAAATGGAAGAGTCGCATTATGGAT CATGAGAGTGGACCCTTTAACGCTGAGAAAATCCTGATTGCAGTCAAAACTTATTGGACTGCTCAAGAAGGTGCAAATTCTTTACCAAAGCAACGTTGA
AA sequence Show only first row Show all	>Lus10008298 pacid=23173708 polypeptide=Lus10008298 locus=Lus10008298.g ID=Lus10008298.BGIv1.0 annot-version=v1.0 MGGKDHGGSSHQLESRRKRLSFILGVTGLCVLFYVLGSWRTTTTVPSSTPFSVQTKASCDPDTNSSSSPPVGRLDFEPHHQIEIENSEKKTEDFPPCEMS YSEYTPCQYPPRGRKFDRDMMKYRERHCPAKEELLFCLIPAPPNYKTPFKWPQSRDYAWYDNIPHKELSIEKAVQNWIQVEGDRFKFPGGGTMFPRGADA YIDDIKYLIPLTGGTIRTAVDTGCGVASWGAYLLKRDILAMSFAPRDTHEAQVQFALERGVPAMIGVMGSQRLPYPARAFDMAHCSRCLIPWFSNDGLYL IEVDRVLRPGGYWILSGPPINWKTHWKGWERSQQDLKHEQDAIEDVAKRLCWKKVAEKKDLLIWQKPINHFECVRNRKVYKTPHMCKSDNPDASWYKNME TCITPLPEVNDDSGDQVAGGALEKWPARAFSVPPRIARGTIPGITAEKFKEDNEVWKERLNHYKQIVNPLVQGWYRNVMDMNAYLGGFAAALIKYPVWVM NVVPSDSNHDTLGAIYERGFVGTYQDWCEAFSTYPRTYDLIHAGNVFSIYQDRCDIAVILLEMDRILRPEGTVVFRDTVEVLVKVQSITNRMKWKSRIMD HESGPFNAEKILIAVKTYWTAQEGANSLPKQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10440			S-adenosyl-L-methionine-depend...		Lus10008298 [exp]	0	1
AT5G23070			Thymidine kinase (.1)		Lus10016925 [exp]	4.1	0.7132
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10035706 [exp]	14.3	0.6695
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10001886 [exp]	14.4	0.6652
AT1G63820			CCT motif family protein (.1)		Lus10024655 [exp]	14.7	0.6516
AT3G14880			unknown protein		Lus10039193 [exp]	16.8	0.6955
AT4G29035			Plant self-incompatibility pro...		Lus10019767 [exp]	23.8	0.6044
					Lus10030519 [exp]	25.1	0.5982
					Lus10008678 [exp]	40.8	0.5940
AT3G15620		UVR3	UV REPAIR DEFECTIVE 3, DNA pho...		Lus10000521 [exp]	45.7	0.6106
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Lus10026678 [exp]	49.9	0.5684

Compare expression of checked genes

Lus10008298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.