Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38120 967 / 0 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033267 [exp] 1119 / 0 AT4G38120 552 / 0.0 ARM repeat superfamily protein (.1.2) Lus10033266 [exp] 1034 / 0 AT4G38120 419 / 6e-134 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G454200 [exp] 1334 / 0 AT4G38120 1032 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008299 pacid=23173718 polypeptide=Lus10008299 locus=Lus10008299.g ID=Lus10008299.BGIv1.0 annot-version=v1.0 ATGTCGGGTTCTTCTTCGTCCGCAGTAAGGGCCTGGAGGACTGCCTTTCTGACACTCCGAGATGAAACCCTTACCAGCAGCCCTAAATCGAAGTCCATTA CCCAACTTCTCAATGATCTCATTTTCTCAAGTTCCAGGGCACTCATCTCTGCCACCCCTGGCCTTCCTCCTCACGAGGTTACCTCTGATGTACTGTTCCT CGTGGAATTGGCTACAAGTTCTCCAAGCGGGCAAGATGTTTCGCCAGTTTTTGCTCATGTTTCCTCTTTGGTGCATGATATCTGCAAGCGTCAACGTGTT CAGCTTCAACTGAATTCTTCTTCTTGGGTTTCTATTCTCAACTGTTTCTCTACCATGGTGCAATTCTTCCTTGCCCACCCTGGTTGCGAACCTCAATTCC CGTCTAAAGCTTCACAAATCGGTCATGCTGTAGATTGCTTGGGGACGGTTAGATATCTTGCCTATGTCTATCGACACAAAAGTGTGCTATCAGATGATGT GCACTTAACAAAGTTTCTTATTGGCATAATTGAAAATTCTTGTGGTCCGTGCTTGTTGTCATCTTACATAAGCCCCGGCAAAAATGCTGCTGCCTCAAGT TGCGATAGATTCTCGAAATGCAGTAACTTATGGGAACTTCAAATAGCTGCATTTGATTTGCTAAGTGAAACGTTCACAAAATCCGGGCCTTCGTTCCCCA CTAATATTTGGCAATCTGCTATCGAGGTGACTAGGAAAGTGATGGACGCCTTGGTGTCTCAAGGATTCCTTGTTGAGGGTGCTCCTGCGTCAAGGTTTTA TGCTGCTCTTCTTGGTTTTCTACATCTGCTTCTTACCAATGCGAAGGGTTCCCATAATGACCATGTTCCTGCTTTTGTGGCAACTTTACGAATGTTCTTC ACATATGGCCTCCCTCAATCCAAATTCTCCCGTAATCTTGACACACGCAAGAATGATGCTAGCTTGACTGCTGGTAAATTGATTTCAGACGAAACTAAGA AAGAGAATACTCCATATCGCCCTCCACACTTGCGTAGGAAGGGAACTGTAAATGTGAAGCAGTGTAAAGCTCGGGGATTACCTTGTTCCACTAGCCAAGA ATCTTGTGCCATGGAACTTATTTCGTCAGATTCAGATTATAGTGACAGTGATGCATCTATTAACGAGAATGACACTATTCAAAGTTCGAAGGTCAGGACT GCTGCCATAGTTTGTTTACAAGATCTTTGTCAAGCTGATCCCAAGTCATTTACCGCCCAGTGGACACTGATTTTGCCTACAACTAACATACTAGAACCAA GGAAATTCGAAGCTACTCTGTTGACTTGCTTGCTATATGATCCTCATATAAAGGTGCGGATGGCATCTGCATCCACTCTGGCTGTCATGTTGGACGGCCC TTCATCTGTTTTCCTGCAAGTAGCTGAGTACAAAGAGTCTAGCAAGTTTGGATCTTTTATGGCCCTGTCAAGCTCACTTGGACGGATACTGATGCAACTT CATGCTGGCCTGCTTCACTTAATCAAGCAAGAAACTCACAGTAGATTGCTAGCATCTTTGTTCAAGATTCTTGTGCTTTTGATTTCTGCTACACCGTATT CGAGAATGCCAACTGAGCTGTTGCCCAGGATAGTTACATCTCTTTTGGAAAGGATGGAACATGGCTTCCTTGTCAAGGGCGACCAAAGTGGTTTGTTGGC TGCCTGTATGAATTGCTTGACAGCTGCCCTTTCCACGTCACCTTCATCACTGCTTGTTAAACAAATGCTTGCAGAAGAAATATCAAAAGGTGTCCTGGTA GACAAGGATCAGTCTGGTGTTCTTTCAACAATATTTCGATATTCAGAGCAACAGACCAGCCCAACAATATGCTTTGAGGCTCTTCAGACTCTTAGAGCTC TAATGCACAATTATCCCAGTACAGCACCAGAATGTTGGGAGCACGTGACCAGCTTAGTCTCCAATATCTTGAAGGCCTCCACTGTGGAAGTATCCTCAGC TATTTGCCAAGGTAGTGGCGACTACAATATTGGCTTTGTCGGAGAGAAGGTCACAACGGCAGCCATCAAGGTTACAGACGAATGTCTCCGTGCAATTTCT GGATTTAAAGGAACAGAGGAACTTTCTGATGATAAATTCTTGGAAACTCCTTTTGCATATGACTGTATAAGGGAAAAGAAAGTTTCTTCTGCACCATTGT ATGAAACAGAGAGTGCAGTGGATAACAAAGTTGAATCGGAAGCATGTGAAACTGCACGTGATCATTGGTCCAGGACAATAGACTGGCTTATGCCTCTGAT ACTACGGCACAATTCTCATATGGTGAGAACTGCATCAATCACTTGTTTTGCGGGTATTACATCTTCAGTCTTTGGGGCTCTCTCAAAGGATGACCAGGAG TTTATTGTAAATTCATCTATCAGTGCTGCTGTGCACGACGAAGTGGCTTCAGTTAGGTCAGCTGCTTGTCGAGCGATTGGTGTGATTTCTTGTTTTCCAC AGATTTCTCATAGTGCAGAGATCCTTGATAGGTTTATCAATGCCATTGTGAAGAATGCTCATGATCCTTTAGCTGCGGTGCGAATTGCGGCTTCATGGGC TTTGGCAAATATATGTGATTCTTTGCGCCATTGTGTGGATGATTTTCCCTTGAGACATTCTACAGATTCAAATGCCAATCCAAACGTGATTGTCTTTCTT ATGGAGTCTGCCCTGCTTCTGACAAAAAGTGGAGATAAGATAAAATCAAATGCTGTGAGGGCTCTTGGAAATCTTTCAAGATTTATTCGATGTATTAATG ATTCATCTGGAGTTGATGATAAGCATGTGAAACATAACAATGTGAGGTTCGAAGGAAGAAGACTAGTTGGTCATGGCCGTGGAAGTTCTGGTTATGCTTC ATTAGGAGATCCATGTTTGTTGCAGAAAATGGTTCAGGCTTTTCTTTCTTGTGTTACTACTGGGAATGTTAAGGTCCAATGGAATGTCTGCCATGCTATC AGCAATCTATTTATAAATGAGACTTTGAGGCTGCAAGATATGGATTGGGCTCCATCAGTTTTCAGCATCCTTCTACTCCTGTTGCGTGATTCTTCTAATT TTAAGATCAGAATACAAGCAGCTGCTGCTCTGGCTGTGCCGGTCTCGGCAATAGATTATGGGGAATCTTTCCCTGATGTACTCCAAGGTTTGGAACATGT GGTCGAGAATCTAAGTTCGGACCAGATTTCGGCACCATCAAGTTTTAAGTATAGGGTTGCACTGAAGAAACAGGTAACATCTACCATGTTGCATGTCCTT AGCCTTACGGCCAGCAGTGATCACCAATCCGTGAAAGACTTTCTTGTCAAAAAAGCGTTGTATCTAGAGGAGTGGTTTAAAGTTCTATGCTCGTCCATAG TTGAGACAAGTCCTCAAGTTGAGGATGGGGATGCCATTGTAAACCGAAAGAAACAGATGATATTCAAGGCAATCCAATCTCTCATTCAAGTCTATGGGAA CAGTAATCATCATTCAATTGCGGAGAAGTTCAAGAATTTGGAAAGAAGATAG
AA sequence Show only first row Show all	>Lus10008299 pacid=23173718 polypeptide=Lus10008299 locus=Lus10008299.g ID=Lus10008299.BGIv1.0 annot-version=v1.0 MSGSSSSAVRAWRTAFLTLRDETLTSSPKSKSITQLLNDLIFSSSRALISATPGLPPHEVTSDVLFLVELATSSPSGQDVSPVFAHVSSLVHDICKRQRV QLQLNSSSWVSILNCFSTMVQFFLAHPGCEPQFPSKASQIGHAVDCLGTVRYLAYVYRHKSVLSDDVHLTKFLIGIIENSCGPCLLSSYISPGKNAAASS CDRFSKCSNLWELQIAAFDLLSETFTKSGPSFPTNIWQSAIEVTRKVMDALVSQGFLVEGAPASRFYAALLGFLHLLLTNAKGSHNDHVPAFVATLRMFF TYGLPQSKFSRNLDTRKNDASLTAGKLISDETKKENTPYRPPHLRRKGTVNVKQCKARGLPCSTSQESCAMELISSDSDYSDSDASINENDTIQSSKVRT AAIVCLQDLCQADPKSFTAQWTLILPTTNILEPRKFEATLLTCLLYDPHIKVRMASASTLAVMLDGPSSVFLQVAEYKESSKFGSFMALSSSLGRILMQL HAGLLHLIKQETHSRLLASLFKILVLLISATPYSRMPTELLPRIVTSLLERMEHGFLVKGDQSGLLAACMNCLTAALSTSPSSLLVKQMLAEEISKGVLV DKDQSGVLSTIFRYSEQQTSPTICFEALQTLRALMHNYPSTAPECWEHVTSLVSNILKASTVEVSSAICQGSGDYNIGFVGEKVTTAAIKVTDECLRAIS GFKGTEELSDDKFLETPFAYDCIREKKVSSAPLYETESAVDNKVESEACETARDHWSRTIDWLMPLILRHNSHMVRTASITCFAGITSSVFGALSKDDQE FIVNSSISAAVHDEVASVRSAACRAIGVISCFPQISHSAEILDRFINAIVKNAHDPLAAVRIAASWALANICDSLRHCVDDFPLRHSTDSNANPNVIVFL MESALLLTKSGDKIKSNAVRALGNLSRFIRCINDSSGVDDKHVKHNNVRFEGRRLVGHGRGSSGYASLGDPCLLQKMVQAFLSCVTTGNVKVQWNVCHAI SNLFINETLRLQDMDWAPSVFSILLLLLRDSSNFKIRIQAAAALAVPVSAIDYGESFPDVLQGLEHVVENLSSDQISAPSSFKYRVALKKQVTSTMLHVL SLTASSDHQSVKDFLVKKALYLEEWFKVLCSSIVETSPQVEDGDAIVNRKKQMIFKAIQSLIQVYGNSNHHSIAEKFKNLERR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38120			ARM repeat superfamily protein...		Lus10008299 [exp]	0	1
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10008452 [exp]	3.5	0.8853
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10022270 [exp]	3.9	0.8471
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Lus10033549 [exp]	5.1	0.8791
AT2G48060			unknown protein		Lus10008175 [exp]	12.4	0.8460
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Lus10025172 [exp]	14.1	0.8053
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Lus10041607 [exp]	16.4	0.8007
AT3G26700			Protein kinase superfamily pro...		Lus10002882 [exp]	23.9	0.7539
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Lus10016051 [exp]	25.7	0.8318
AT4G38120			ARM repeat superfamily protein...		Lus10033266 [exp]	27.5	0.8578
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10038491 [exp]	30.6	0.8279

Compare expression of checked genes

Lus10008299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.