Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033269 [exp] 825 / 0 ND / Lus10034741 [exp] 157 / 5e-45 ND / Lus10022964 [exp] 103 / 6e-26 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G103100 [exp] 501 / 4e-173 ND / Potri.001G130800 [exp] 468 / 1e-160 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008301 pacid=23173715 polypeptide=Lus10008301 locus=Lus10008301.g ID=Lus10008301.BGIv1.0 annot-version=v1.0 ATGGATACTGAGGGAAGAGGGTTCTCTTCAGATTTGTGTAGGAACACAAGTGAGGAGATGTTCATCAAGTCCTTGATGGAAACTTCTTCTGGGGTTGGAG CACCAACCATGGAGATGCTAGGGTTTAAGAATCTTTCCCAGAATTTTCGAACTGACAGTGAGGAGCTCTTCAAGAGCTGGCTTACTACTGGAGAGGCAAG CACTATTACAAACTTTAATGGAGCTGATCCATCCTGTCTACAGAATACTCATGGATATGGCACACCAAGCATCGCACATCGGACGCGACAAGCATCAAAG AGGATGTCCACTGAAACCACCAATTTTTTGAGTCATCAACACGGGGCGACTCTACAAAAGGAAAGAAGCACAGATGTTCTGTTTACACAAAATCATCCAA TTTCTGAGGATACCTACAATCGACAAGTAATCAATAAGGGAACTGTTGACAGGAACGCACAAGCTAGTAATTTATACTTGGCCAAGGCCTGGTTTCAGAG TTCTCAACCTATGACACGGAGCAGATCATCTGAGCTACGGAAGAGATATGTGGCCATGCAAACTTCTGGAGAGAACGGTTCTGCAAATGATGAAGGTGGA ATGAGACACGAGTTCTCAAATCAAAGCCGTCTCGGTGACCCCTCTTTGCACGATGTAGCGAATCAAATCGGAACATTCATGTCGCCATCCAACTCATCCT CGTCGAATTTCAACACACCTCAGTCTGGAAATTTGGACAACGTATCTTCAGTGGTGAATATGCTGAAGGGCACCCTCGAACGCAAGAAGCTCGGGAACCA CACTACTATTGGAGGAACTATGGAAGACAGTTCCAATGCAATTTATAATCAGCAGCATGGATATGCGCAAGAAGTAGTTACGATGAACCCTAGATTCGAG GAAGGGAACCGGGGTCTGGATAGTTTACAAGAGTTGGCATCAGCAATAGCCAAGAACCCTGTGAACAACACCAGCTTTCTGGAGACGGTACAAGAAGTGA TGAATTTCGAGATGGGAGGCTTTGCTGCAAATCCGGCCAGTTCGATCCATATGAACACTGTTTCTCGTGAGCCTTCCCCCAGCGAATCTTCAGCTGCTGC GCCAGTTGTTTCGTCTAGGTTTGACGTGTATGATGGTGCCAGTAACTCCAGTCAAAATGTTACTTGTGGGAGCTCAAAGAAAGCTATTGCAAATGGTTCA GAACAAGGTGGAAAAGCCAGAGTCATGTTTACAGAAATCAGAGAAAGGATAATTGACAATCTGAAGGATGACAGAAAGAAGCTAGTGCGGTATGGATCAA TAACATCAGCTACTTCAGTGGAAACTGGAGACCCGACGAAGAAGCGCAGGGTGGAACGCTCTCGGAAGATGGCAGAAGCGAAGGAGAGGAGTTCGACACC TGCAATTCCATCAGATATGCCGTCAGTGACCAAAAGGTGTGAGCTTTTGGAGAAGGAAGTCAGATCACTCAAACTTAACTTGTCTTTCATGAACCGAAAG GATTCCGAACAGACTAAGCAGATCGAGGATCTCCAGAAACAGAACGAGGAGTTGACAGAAGAGAAAGAACGTCTGCTCGAGGAGATGGAGAGGATACTTT CCGAAACCGGCAAGTTCTGA
AA sequence Show only first row Show all	>Lus10008301 pacid=23173715 polypeptide=Lus10008301 locus=Lus10008301.g ID=Lus10008301.BGIv1.0 annot-version=v1.0 MDTEGRGFSSDLCRNTSEEMFIKSLMETSSGVGAPTMEMLGFKNLSQNFRTDSEELFKSWLTTGEASTITNFNGADPSCLQNTHGYGTPSIAHRTRQASK RMSTETTNFLSHQHGATLQKERSTDVLFTQNHPISEDTYNRQVINKGTVDRNAQASNLYLAKAWFQSSQPMTRSRSSELRKRYVAMQTSGENGSANDEGG MRHEFSNQSRLGDPSLHDVANQIGTFMSPSNSSSSNFNTPQSGNLDNVSSVVNMLKGTLERKKLGNHTTIGGTMEDSSNAIYNQQHGYAQEVVTMNPRFE EGNRGLDSLQELASAIAKNPVNNTSFLETVQEVMNFEMGGFAANPASSIHMNTVSREPSPSESSAAAPVVSSRFDVYDGASNSSQNVTCGSSKKAIANGS EQGGKARVMFTEIRERIIDNLKDDRKKLVRYGSITSATSVETGDPTKKRRVERSRKMAEAKERSSTPAIPSDMPSVTKRCELLEKEVRSLKLNLSFMNRK DSEQTKQIEDLQKQNEELTEEKERLLEEMERILSETGKF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008301 [exp]	0	1
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10040945 [exp]	2.4	0.9675
AT3G21530			DNAse I-like superfamily prote...		Lus10012772 [exp]	4.0	0.9564
AT2G37050			Leucine-rich repeat protein ki...		Lus10004275 [exp]	4.9	0.9674
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024078 [exp]	5.7	0.9669
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10000038 [exp]	6.0	0.9673
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10014429 [exp]	6.7	0.9488
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10007513 [exp]	6.9	0.9610
AT1G27170			transmembrane receptors;ATP bi...		Lus10026011 [exp]	7.5	0.9295
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036820 [exp]	8.1	0.9642
AT3G14610		CYP72A7	"cytochrome P450, family 72, s...		Lus10036823 [exp]	8.4	0.9549

Compare expression of checked genes

Lus10008301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.