Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19110 616 / 0 Protein kinase superfamily protein (.1.2.3) AT5G45430 540 / 0 Protein kinase superfamily protein (.1.2) AT4G13020 383 / 1e-129 MHK Protein kinase superfamily protein (.1.2.3.4.5) AT1G66750 215 / 4e-65 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1) AT3G48750 207 / 5e-63 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G18040 209 / 2e-62 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT1G73690 205 / 8e-61 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT5G63370 201 / 2e-58 CDKG;1 Protein kinase superfamily protein (.1.2.3.4) AT1G59580 198 / 2e-58 ATMPK2 mitogen-activated protein kinase homolog 2 (.1.2) AT2G18170 197 / 3e-58 ATMPK7 MAP kinase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033278 [exp] 1006 / 0 AT4G19110 620 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10038123 [exp] 582 / 0 AT4G19110 555 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10003155 [exp] 391 / 2e-132 AT4G13020 629 / 0.0 Protein kinase superfamily protein (.1.2.3.4.5) Lus10025986 [exp] 199 / 4e-59 AT2G18170 617 / 0.0 MAP kinase 7 (.1) Lus10017371 [exp] 200 / 6e-59 AT1G18040 564 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10007921 [exp] 199 / 7e-59 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10040530 [exp] 200 / 1e-58 AT1G18040 593 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10014283 [exp] 197 / 4e-58 AT2G18170 611 / 0.0 MAP kinase 7 (.1) Lus10036384 [exp] 197 / 6e-58 AT4G01370 681 / 0.0 MAP kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G101600 [exp] 696 / 0 AT4G19110 689 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.003G190200 [exp] 502 / 6e-176 AT4G19110 508 / 5e-179 Protein kinase superfamily protein (.1.2.3) Potri.010G154400 [exp] 462 / 2e-161 AT4G19110 451 / 4e-158 Protein kinase superfamily protein (.1.2.3) Potri.016G012801 [exp] 461 / 5e-161 AT4G19110 452 / 3e-158 Protein kinase superfamily protein (.1.2.3) Potri.002G247500 [exp] 392 / 1e-132 AT4G13020 629 / 0.0 Protein kinase superfamily protein (.1.2.3.4.5) Potri.001G035400 [exp] 305 / 9e-102 AT4G19110 306 / 9e-104 Protein kinase superfamily protein (.1.2.3) Potri.004G133500 [exp] 211 / 2e-64 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.015G092100 [exp] 208 / 3e-59 AT1G67580 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G119500 [exp] 199 / 1e-58 AT2G18170 662 / 0.0 MAP kinase 7 (.1) Potri.005G231100 [exp] 197 / 5e-58 AT1G59580 617 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10008303 pacid=23173713 polypeptide=Lus10008303 locus=Lus10008303.g ID=Lus10008303.BGIv1.0 annot-version=v1.0 ATGCCGCTTCCTTCTCAGGCTCTACCAGACTTGGATCTAAACTGCTTTGTCCCCTTGCATAAGACATGGAGCAAGTGCACATCTGTGGAAGGATTCTCCT CAACAGAGAGTACTGGAGGTGTGATGCAAAGTTTTTCTGAGATTGGTGGTCCATCTTTAGTGCCCTGGTTCAAGTACAAGCTAATCAAGGAAGTTGGTGA TGGAACATTTGGGAGTGTCTGGCGAGCCCTCAGTAGACACTCTGGTGAAGTTGTTGCTATTAAAAAGATGAAGAGAAAGTATTATTCTTGGGAGGAATGT GTAAATCTCAGAGAAGTGAAGTCTCTGCGTAGGATGAATCATCCAAATATCGTTAAGCTCAAGGAAGTTATTCGAGAAAGTGATGTTCTGTATTTCATCT TTGAGTACATGGAATGCAACCTTTACCAACTAATGAAGGACCGAGAAAAGCTATTCTCTGAAACTGAAATAAGGAACTGGTGTTTCCAAGTATTCCAGGG TCTTGCGTATATGCATCAACGTGGATACTTCCATCGCGATTTGAAGCCAGAAAATTTGTTAGTTACGAAATCTGTGATCAAGATTGCTGATTTTGGTCTA GCACGGGAAATCAATTCACAACCACCATACACTGAATATGTCTCAACAAGATGGTACCGGGCCCCTGAGGTTCTTCTTCAGTCATCCCTATACGGTCCTA AAGTTGATATGTGGGCGATGGGTGCTATAATGGCAGAGCTTTTTAGTCTACGACCTCTTTTCCCTGGTACCAGTGAAGCAGATGAGATTCACAGAATATG CAGTGTAATAGGAACTCCTACACTGGACACGTGGGCCGATGGTCTAAAACTGGCCTCCAGTATGCACTACCAATTTCCCGTGTTCTCTGGTGTGCACCTT TCAACATTGCTACCTTCAGCCAGTGATGATGCAGTTCAACTTATTACGTCTCTGTGTATGTGGGATCCTGACAAGAGGCCAACAGCTTCAGAGGTCCTTC AGCATCCTTTCTTCCAGAGCTGCTTCTATGTCCCACCATCTCTCCGCTCTAGGCCATCTGTTACTAGGACGCCTCCATCTGCTACCACAAAGGGTTCGAT GGAGCAACAATGTGCCAGAAGATGCTCTTCAACTTTGCCTAGTTCAAAGATGGTCTACAATTCCGCTTCTGGGAAGTTACATGCTTCATTGAGTACAGGT GTCCAGCGGAAACTTGATATGGTGGTTGATCAGGATGACAAAACACCAAAGAATACTGCCAGACAACAACCAAAATATCGTCCACCAGCAAGGAAAAGCC CTACTTCAACAATCAGGGGTCGAGCTACCAGTGGGAGCTCGGACATGGCAGATAAGTTTGGAAGCATGAGCATAGTGTCTCGGAAGCCGACAGTTGGGCA GACGACTAGCACGAAGGCACCATCAATGAAGACGGGTGTGCAGTGGAATGCTGCAACGAGCAGTGACTCGTTCCTGAGGTCTGCAAAACCATTCCAATCT GGGAGAAGTCTGACGAGAAAAGTTGCAGGATGA
AA sequence Show only first row Show all	>Lus10008303 pacid=23173713 polypeptide=Lus10008303 locus=Lus10008303.g ID=Lus10008303.BGIv1.0 annot-version=v1.0 MPLPSQALPDLDLNCFVPLHKTWSKCTSVEGFSSTESTGGVMQSFSEIGGPSLVPWFKYKLIKEVGDGTFGSVWRALSRHSGEVVAIKKMKRKYYSWEEC VNLREVKSLRRMNHPNIVKLKEVIRESDVLYFIFEYMECNLYQLMKDREKLFSETEIRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVTKSVIKIADFGL AREINSQPPYTEYVSTRWYRAPEVLLQSSLYGPKVDMWAMGAIMAELFSLRPLFPGTSEADEIHRICSVIGTPTLDTWADGLKLASSMHYQFPVFSGVHL STLLPSASDDAVQLITSLCMWDPDKRPTASEVLQHPFFQSCFYVPPSLRSRPSVTRTPPSATTKGSMEQQCARRCSSTLPSSKMVYNSASGKLHASLSTG VQRKLDMVVDQDDKTPKNTARQQPKYRPPARKSPTSTIRGRATSGSSDMADKFGSMSIVSRKPTVGQTTSTKAPSMKTGVQWNAATSSDSFLRSAKPFQS GRSLTRKVAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19110			Protein kinase superfamily pro...		Lus10008303 [exp]	0	1
AT3G14910			unknown protein		Lus10043078 [exp]	1.4	0.9364
AT3G59660			C2 domain-containing protein /...		Lus10027067 [exp]	3.7	0.9253
AT5G61150		VIP4	VERNALIZATION INDEPENDENCE 4, ...		Lus10040529 [exp]	3.9	0.9138
AT5G28850			Calcium-binding EF-hand family...		Lus10021174 [exp]	4.9	0.9333
AT2G21120			Protein of unknown function (D...		Lus10026280 [exp]	5.2	0.9191
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10002453 [exp]	6.1	0.9411
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Lus10035023 [exp]	6.5	0.9340
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10012149 [exp]	8.9	0.9126
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10039131 [exp]	9.2	0.9258
AT2G26510		PDE135	pigment defective embryo 135, ...		Lus10002787 [exp]	10.2	0.9123

Compare expression of checked genes

Lus10008303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.