Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40020 299 / 2e-102 Pathogenesis-related thaumatin superfamily protein (.1) AT1G18250 196 / 2e-62 ATLP-1 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G73620 195 / 1e-61 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75050 193 / 5e-61 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75040 192 / 5e-61 PR-5, PR5 pathogenesis-related gene 5 (.1) AT4G38660 192 / 1e-59 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75030 189 / 2e-59 ATLP-3 thaumatin-like protein 3 (.1) AT5G24620 192 / 2e-58 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75800 182 / 5e-56 Pathogenesis-related thaumatin superfamily protein (.1) AT4G24180 178 / 3e-55 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009058 [exp] 199 / 1e-63 AT1G73620 376 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1) Lus10015705 [exp] 194 / 1e-61 AT1G75030 256 / 6e-86 thaumatin-like protein 3 (.1) Lus10032726 [exp] 192 / 9e-61 AT1G75030 334 / 5e-117 thaumatin-like protein 3 (.1) Lus10013561 [exp] 191 / 4e-59 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10025055 [exp] 189 / 5e-59 AT4G38660 359 / 6e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10037483 [exp] 189 / 4e-58 AT1G75030 242 / 3e-79 thaumatin-like protein 3 (.1) Lus10017266 [exp] 187 / 6e-58 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10003962 [exp] 183 / 4e-57 AT5G02140 387 / 4e-137 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028448 [exp] 179 / 6e-55 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G075500 [exp] 342 / 1e-119 AT5G40020 355 / 1e-124 Pathogenesis-related thaumatin superfamily protein (.1) Potri.015G039200 [exp] 205 / 1e-65 AT1G73620 352 / 1e-123 Pathogenesis-related thaumatin superfamily protein (.1) Potri.015G000800 [exp] 197 / 6e-62 AT5G24620 351 / 4e-120 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.012G047800 [exp] 192 / 1e-60 AT1G73620 379 / 3e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.009G132500 [exp] 192 / 1e-59 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G241000 [exp] 191 / 2e-59 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.014G040700 [exp] 189 / 2e-59 AT1G75030 342 / 5e-120 thaumatin-like protein 3 (.1) Potri.004G173200 [exp] 189 / 1e-58 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.006G088100 [exp] 183 / 3e-57 AT5G02140 375 / 4e-132 Pathogenesis-related thaumatin superfamily protein (.1) Potri.012G004800 [exp] 185 / 5e-57 AT5G24620 358 / 1e-122 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10008304 pacid=23173700 polypeptide=Lus10008304 locus=Lus10008304.g ID=Lus10008304.BGIv1.0 annot-version=v1.0 ATGAAGCTCCAACATATGATCAATGCCATTGCCGTATTCTATTATCTCCTTGGGGTAGCATTAGGCCATCAAGTAAACTTTTATGTGCACAACAAATGTC CCTTCACAATCTGGCCCGCCACAGCTCCTAACGCCGGCCATCCTGTCATCGCCGACGGCGGATTCCATCTCCCATCCGGTTCAACACAACGTATAACCGC TCCATGGAACTGGTCCGGCAGATTCTGGGCCCGAACCGGCTGCAATTTCCAACCCGCCGCATCCAACTGGCAACCCGCCTGCGACACCGGCGACTGCGAC GGGCTCCTGCAATGCAACGGGCTGATCGGAACCCCTTCGGCGACTCTCATCGAAGTCACCCTTACAGCGGACAAGGGCGGGCCGGCTTTCTACGACGTTA GCTTGGTCGACGGCTACAACATCCCCGTGGCCGTCCTGAGCCGACCCCTTTCGACTAAGTGCGCCGTCGGCGGATGCCTCAGGGATTTAAACGGTTGCTG CCCGCCGGAGCTCCAAGTGCTGAGCCGCGATGGGTCGGGGCGGGTGGTGGGTTGTAAGAGCGCTTGTACGACGTTCAACCTCGACTCGTTCTGCTGTCGG AACGAGTATGGACGGCCAGAGAAGTGTAAGCCGAGCGTTTACTCGAAGATGTTTAAGGATGCTTGCCCTAGTTACTACAGCTACGCGTATGATTCGCCGC CGCCGTTGGTGAATTGCAGTGCCAAGGAATATGTCGTCACTTTTTGTCCTTCCTCCTGGGGTGCCGACGAGGGCCAAATTGTGGACAACGTCGTTATGTG A
AA sequence Show only first row Show all	>Lus10008304 pacid=23173700 polypeptide=Lus10008304 locus=Lus10008304.g ID=Lus10008304.BGIv1.0 annot-version=v1.0 MKLQHMINAIAVFYYLLGVALGHQVNFYVHNKCPFTIWPATAPNAGHPVIADGGFHLPSGSTQRITAPWNWSGRFWARTGCNFQPAASNWQPACDTGDCD GLLQCNGLIGTPSATLIEVTLTADKGGPAFYDVSLVDGYNIPVAVLSRPLSTKCAVGGCLRDLNGCCPPELQVLSRDGSGRVVGCKSACTTFNLDSFCCR NEYGRPEKCKPSVYSKMFKDACPSYYSYAYDSPPPLVNCSAKEYVVTFCPSSWGADEGQIVDNVVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40020			Pathogenesis-related thaumatin...		Lus10008304 [exp]	0	1
AT5G56980			unknown protein		Lus10025985 [exp]	1.4	0.9636
AT2G28410			unknown protein		Lus10022579 [exp]	1.7	0.9671
AT5G02640			unknown protein		Lus10009066 [exp]	1.7	0.9575
AT3G18715		IDL4	inflorescence deficient in abs...		Lus10020848 [exp]	2.2	0.9491
AT4G12440		APT4	adenine phosphoribosyl transfe...		Lus10032249 [exp]	4.1	0.9240
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10038556 [exp]	4.9	0.9372
AT2G28410			unknown protein		Lus10021476 [exp]	7.1	0.9378
AT5G02640			unknown protein		Lus10025282 [exp]	7.7	0.9551
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10025876 [exp]	20.5	0.9159
AT1G58070			unknown protein		Lus10015482 [exp]	20.9	0.9459

Compare expression of checked genes

Lus10008304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.