Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47990 357 / 2e-121 SWA1, EDA13, EDA19 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) AT1G15440 45 / 4e-05 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035065 [exp] 546 / 0 AT2G47990 528 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Lus10017890 [exp] 539 / 0 AT2G47990 584 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Lus10015340 [exp] 538 / 0 AT2G47990 594 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Lus10015310 [exp] 108 / 3e-28 ND 96 / 4e-23 Lus10001951 [exp] 43 / 0.0004 AT1G15750 1007 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10001924 [exp] 42 / 0.0006 AT1G15750 1006 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G213500 [exp] 394 / 1e-135 AT2G47990 587 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Potri.014G135600 [exp] 393 / 3e-135 AT2G47990 614 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Potri.013G079600 [exp] 41 / 0.0007 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09384 [flax] [poplar] UTP15_C UTP15 C terminal
Representative CDS sequence Show only first row Show all	>Lus10008305 pacid=23173738 polypeptide=Lus10008305 locus=Lus10008305.g ID=Lus10008305.BGIv1.0 annot-version=v1.0 ATGTTTGCTACTGCAGGAGGCAACAGCGTGAAGATATGGGACGTAACAGGGGGAGGGAGGATGGTGCATTCGATGGAGAGCCATAACAAGACTGTAACTT CAATTTGCTTGGGAATGATTGGAGGAGAATACAGAATACTGAGCGTAGGTTTAGATGGGTACATGAAGGTGTTCGATTATGCTAAAATGAAGGTAACTCA TTCAATGAGGTACCCTGCTCCGCTAATGTCGGTAGCCGTGTCACCCGATGGGAAAAGGAGGGCGATTGGGACTTCGAATGGGATGATATTTGCAGGGAAG AGGAAGGTTAAGAAGGATGAGGATGGCGTGGAAGAGGGTTCAGAATATGGAATTTTGAAAGGATTGGGAATTGGAGGAGAGATGAAGAGAGTGTTAAGGC CGACGAATTTCAGGTACTTCCATAGAAGCCAAGGGGAGAAGGCTAATGAAGGGGACTATTTGGTGAGCAGGAAAAGGAAGGTGAAGTGGACAGAGCATGA TAAGCTGCTTAACAAGTTCAGACACAAAGAGGCGCTTGTGTCTGTGCTTGGGAGTAAGGATCCGGGGAATGTGGTTGCAGTTATGGAGGAACTGGTGGCC AGAAGGAAGCTCATCAAGTGTGTGATGAACCTAGAGGAAGACGAGCTTGGGTTGCTGCTTAGTTTTCTACACAGGTATGCAACCATGCCGCGGCATTCGA GGCTGCTGATGGGATTGACAAGGAAGGTTCTGGAGTTGAGGGCTGAAGATATCAAAGCTTCGGATGAGTTGAAGGTTTCTATTAGGAACCTTAAGAGCTC GCTCGATGCCGAGATCAGGATACAGCAGGCGTTGCAAGAGATTCACCGTATCATTTCTCCTCTCTTGAGAATTGCTGGCAGAAAATAG
AA sequence Show only first row Show all	>Lus10008305 pacid=23173738 polypeptide=Lus10008305 locus=Lus10008305.g ID=Lus10008305.BGIv1.0 annot-version=v1.0 MFATAGGNSVKIWDVTGGGRMVHSMESHNKTVTSICLGMIGGEYRILSVGLDGYMKVFDYAKMKVTHSMRYPAPLMSVAVSPDGKRRAIGTSNGMIFAGK RKVKKDEDGVEEGSEYGILKGLGIGGEMKRVLRPTNFRYFHRSQGEKANEGDYLVSRKRKVKWTEHDKLLNKFRHKEALVSVLGSKDPGNVVAVMEELVA RRKLIKCVMNLEEDELGLLLSFLHRYATMPRHSRLLMGLTRKVLELRAEDIKASDELKVSIRNLKSSLDAEIRIQQALQEIHRIISPLLRIAGRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10008305 [exp]	0	1
AT1G27435			unknown protein		Lus10032003 [exp]	3.5	0.8902
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10023565 [exp]	10.0	0.9123
AT5G14050			Transducin/WD40 repeat-like su...		Lus10038375 [exp]	11.8	0.9021
AT4G00930		CIP4.1	COP1-interacting protein 4.1 (...		Lus10011397 [exp]	18.2	0.8816
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10022881 [exp]	19.4	0.8854
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10040451 [exp]	22.9	0.8880
AT4G12130			Glycine cleavage T-protein fam...		Lus10032204 [exp]	23.2	0.8205
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Lus10018109 [exp]	23.9	0.8765
AT2G35540			DNAJ heat shock N-terminal dom...		Lus10039019 [exp]	26.8	0.7929
AT1G14060			GCK domain-containing protein ...		Lus10026621 [exp]	27.7	0.8744

Compare expression of checked genes

Lus10008305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.