Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47980 1208 / 0 SCC3, ATSCC3 sister-chromatid cohesion protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015341 [exp] 1940 / 0 AT2G47980 1347 / 0.0 sister-chromatid cohesion protein 3 (.1) Lus10023798 [exp] 436 / 2e-135 AT2G47980 371 / 3e-111 sister-chromatid cohesion protein 3 (.1) Lus10034339 [exp] 258 / 3e-71 AT1G25350 1290 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Lus10041432 [exp] 66 / 7e-13 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G230800 [exp] 1367 / 0 AT2G47980 1292 / 0.0 sister-chromatid cohesion protein 3 (.1) Potri.014G151400 [exp] 1060 / 0 AT2G47980 957 / 0.0 sister-chromatid cohesion protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08514 [flax] [poplar] STAG STAG domain
Representative CDS sequence Show only first row Show all	>Lus10008306 pacid=23173694 polypeptide=Lus10008306 locus=Lus10008306.g ID=Lus10008306.BGIv1.0 annot-version=v1.0 ATGGAGGGCGCAGCTGAAGTCAGGGGAACTCGTCGCTCTAAGCGGAATCATACCGCGACTGCTAGGAGAGCAACTGGCAGCCGAGGCGAACATCAGGAGA CTTCTGTTGGTGCTTCTGACGATGGACCTTCTTCCCATGATGAACTTGAGGATGATTTCGAAGAACTTCGTCCTCAACCTAAGCGGAATCGTATTACCGA GGGAAGTTCGGCTGCTCATCCCGAGTCGATTACGTTGACTGAGGCCGTCAAGGGTGATGGAAGAAGAATTCCTCAAGTGGCAAAGTCTTGGGTGGAACGT TACGAGAAGGATCCAAAACCTGCGATGGCTGAACTATTAAATATGCTATTTGAGGCATGTGGAGCTAAGTATCAAACTGAAATGGAGTTGGTAGACGAGA CTGATGTTGATGAAGTCGTAGTTGCACTTGTTAATCTTGCCAGACAGGATAAAACTGAAGATCACCAAAGTTTGAAGCGGAAGGATTTTAGGAACTTCAG AGATAACCTTGTGTTTTTCTGGGACAATCTGGTCGTTGAGAGCCAAAATGGCCCATTGTTTGACAAAGTATTGTTTGACAAGTGCATGGATTATATTATT GCCCTGTCATGCACACCTCCAAGGGTTTTCAGTCAAGTAGCTTCCTTGATGGGTCTTCAACTTGTTACATCCTTCATTACTGTTGCCAAGGTGCTTGGCT CGCAAAGAGAAACTACTCAGAGGCAGTTAAATGCTGAAATGAAAAAACGCACTGATGGTCCTCGTGTGGATTCACTAAATAAAAGGTTGTCAACAACTCA TGATAACATAATCATGCTAGAGGAAATGATGCGCAAAATATTTACTGGTTTATCTTATCCGTCGCATTTTCTGCGAGATTCGTACTTAAAGTACCTCGGT TGGACGCTGAATGACAAAAATGCTGGTGTGAGGAGGACATCAATCCTTGCATTGCAAAATCTCTATGATGTGGATGATAATGTGCCAATTCTTAGTCTGT TTTCTGAAAGATTTTCCAACCGGATGATTGAGCTTGCTGATGACGTAGATGTTTCTGTGGCTGTTTGTGCGATTGGACTTGTGAAGCAATTACTTAGGCA TCAGCTTCTCCCTGAAGATGACTTGGGTCCACTGTATGATTTACTGATTGATGATCCACCAGAGATTAGACATGCGATTGGAGAATTAGTATATGATCAC TTGATAGCTCAAAAATATAATGGCCTATCTGGCATAAGAGGCAGTGACAAGGCCTCTTCTGAGGTACTCCTCAGTCGAGTGCTGCAAATTTTGAGGGAGT TTTCAACAGACCCAATACTCAGTGTCTATGTTATCGATGATGTGTGGGAGTACATGAAAGCAATGAAGGACTGGAAGTGTATTATATCCATGCTCCTGGA CGAGAATCCCAGGACAGAGCTTACTGATGATGATGCCACAAACTTGGTCAGACTTCTTTTTGCTTCTACCAGAAAAGCTGCTGGACAGAGAATTGTTCCG TCATCAGACAACCGAAAACAATATTACAACAAAGCACAAAGAGAACAATTTGAAACTAGCAAGCGGGACATAACAGTAGCAATGATGAAAAATTACCCAC TTCTGCTACGGAAATATGTGGCTGAGAAATCAAAGATACCTTCATTGGTCGAGACAATTTTGTATATGGACTTGGAGCTTTATTCACTCAAGAGACAGGA CGAGAACTTCAGAAGTGTTCTGCTACTCATCAAAGAGGCATTTTTTAAACATGGGGAGAAGGAGGCCTTGAGATCTTGTGTGAAAGCACTTAATTTTTGC TCAGTAGAGAGCAAAGGAGAGCTGAAAGATTTTTCCTGTAATCAGCTGAAGTATCTCGAGGATGAGCTTATTGCTAAGCTTCAATCTGCTCTGAAAGAAG TTGCTGATGGAGATGAATACTCTCTTCTTGTCAATTTGAAAAGGTTATATGAGCTTCAATTGTCGAAGACTGTACCACTTGAGAGTTTATTTGAAGATTT TGTTAACGTTCTTCATGATTTCAGAACTGGAAATGATGAGGTTGCGAGTTTTCTGCTTCTCAACATGTATTTGCATGTGGTTTGGTCTTTACATGCTGTT GTTAATAGTGAAACCATCTCTGAAGAAGCTTTATCTTCCTTGCTGGTGAAACAAGATACCTTGTTTAAAGAACTCCAATACTTTGTTGGTAGCCAGTCTG ATGAGGAGGGGCATACCTACGAAGATCAGTTAGCTTGCAGGGTTTGCATCATAATCGCAGAGGCATGTTGCCTATTTCGACATAGTAATTTTTCATCAAG CCAACTGGAAAGTTTGGGCTATAGCCCTGACTCATCTTTTCTCCGTGGGTTTTGGAAGCTTTGTGAGAAGCAGCTGAAAGTTACAGATGTGACAGAAGAT GAACGTGTGAACGAGTACGTTGAAGAGACAAATAGAGATGCTATTATGATTGCTGCTGCCAAGTTAGCTACCACTGATGCTGTTTCGAAAGAATATCTTT GTCCACAAATCATATCTCACTTTGTAATGCATGGTACGGGCATCACAGATGTCATTAAACATTTTATCATTGCTATAAAGAAAAGTGGAGATGATTGTCC CTTTATCTTCCTAGAAGCTTTGAAGAAGGCATATGGACGGCATATGTTAGAAGTTGACAGAACGGCTGATGAATCGGTGACAAGCAAGACGTTTCAAGAT TGCAAGGATCTGGCTGCCCGAATTTCTGGGTCATTTGTGGGTGCTGCTCGAAATAAGCATTGGTTGGATATTCTTAAAATGGTGAAGGGTGGTATTGAGT ATGCTTTCTTAGATGCTCCGAAACAGTTATCATTTCTCGAAGGTGTGGTGCTTCATTTCGTTCCCAGACTTCCTGTGTCTGACATCTTGGAAATTCTCAA GGATGTGGAACGCAGAACTGAGAATGTGAACAGTGATGAAGATCCAAGTGGTTGGCGCCCCTATAATAATTTTGTGAACAGCCTGCAAGAGAAGTATGCT AAGAATGAAGGCTTCCCAATCCCAGAGGAGGGTAATACAATTAAGCGAAGAGCTCGTCCAAGGAAGCGGAGAAACATCAATGGGAAGAAACTGTTTGATG ACCATAGTTCAAGTGAAGCCGATTCCATCAGTGCATTGGATGAAGAAGAGGGACAGGGTCAAGATGAAGATGAAGATGTTCCGTTAAGCGCATTGAGAAA TAGAGTTTCAGCTTCTAGGGCATCAGGTAATGTATAA
AA sequence Show only first row Show all	>Lus10008306 pacid=23173694 polypeptide=Lus10008306 locus=Lus10008306.g ID=Lus10008306.BGIv1.0 annot-version=v1.0 MEGAAEVRGTRRSKRNHTATARRATGSRGEHQETSVGASDDGPSSHDELEDDFEELRPQPKRNRITEGSSAAHPESITLTEAVKGDGRRIPQVAKSWVER YEKDPKPAMAELLNMLFEACGAKYQTEMELVDETDVDEVVVALVNLARQDKTEDHQSLKRKDFRNFRDNLVFFWDNLVVESQNGPLFDKVLFDKCMDYII ALSCTPPRVFSQVASLMGLQLVTSFITVAKVLGSQRETTQRQLNAEMKKRTDGPRVDSLNKRLSTTHDNIIMLEEMMRKIFTGLSYPSHFLRDSYLKYLG WTLNDKNAGVRRTSILALQNLYDVDDNVPILSLFSERFSNRMIELADDVDVSVAVCAIGLVKQLLRHQLLPEDDLGPLYDLLIDDPPEIRHAIGELVYDH LIAQKYNGLSGIRGSDKASSEVLLSRVLQILREFSTDPILSVYVIDDVWEYMKAMKDWKCIISMLLDENPRTELTDDDATNLVRLLFASTRKAAGQRIVP SSDNRKQYYNKAQREQFETSKRDITVAMMKNYPLLLRKYVAEKSKIPSLVETILYMDLELYSLKRQDENFRSVLLLIKEAFFKHGEKEALRSCVKALNFC SVESKGELKDFSCNQLKYLEDELIAKLQSALKEVADGDEYSLLVNLKRLYELQLSKTVPLESLFEDFVNVLHDFRTGNDEVASFLLLNMYLHVVWSLHAV VNSETISEEALSSLLVKQDTLFKELQYFVGSQSDEEGHTYEDQLACRVCIIIAEACCLFRHSNFSSSQLESLGYSPDSSFLRGFWKLCEKQLKVTDVTED ERVNEYVEETNRDAIMIAAAKLATTDAVSKEYLCPQIISHFVMHGTGITDVIKHFIIAIKKSGDDCPFIFLEALKKAYGRHMLEVDRTADESVTSKTFQD CKDLAARISGSFVGAARNKHWLDILKMVKGGIEYAFLDAPKQLSFLEGVVLHFVPRLPVSDILEILKDVERRTENVNSDEDPSGWRPYNNFVNSLQEKYA KNEGFPIPEEGNTIKRRARPRKRRNINGKKLFDDHSSSEADSISALDEEEGQGQDEDEDVPLSALRNRVSASRASGNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10008306 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10011741 [exp]	1.4	0.9413
AT5G49880			mitotic checkpoint family prot...		Lus10007439 [exp]	1.4	0.9307
AT1G79190			ARM repeat superfamily protein...		Lus10022448 [exp]	2.8	0.9126
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	4.9	0.9139
AT3G57570			ARM repeat superfamily protein...		Lus10042364 [exp]	5.7	0.9005
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10010754 [exp]	5.8	0.8931
AT3G52640			Zn-dependent exopeptidases sup...		Lus10007388 [exp]	6.3	0.9020
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Lus10003572 [exp]	7.1	0.9062
AT5G06120			ARM repeat superfamily protein...		Lus10041603 [exp]	7.7	0.9049
AT3G59410		ATGCN2, GCN2	ARABIDOPSIS THALIANA GENERAL C...		Lus10014896 [exp]	7.9	0.9042

Compare expression of checked genes

Lus10008306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.