Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15070 1540 / 0 Phosphoglycerate mutase-like family protein (.1.2) AT3G01310 1509 / 0 Phosphoglycerate mutase-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015343 [exp] 1863 / 0 AT3G01310 1726 / 0.0 Phosphoglycerate mutase-like family protein (.1.2) Lus10032191 [exp] 1370 / 0 AT5G15070 1465 / 0.0 Phosphoglycerate mutase-like family protein (.1.2) Lus10005263 [exp] 1284 / 0 AT5G15070 1377 / 0.0 Phosphoglycerate mutase-like family protein (.1.2) Lus10017732 [exp] 239 / 1e-70 ND / Lus10027644 [exp] 222 / 3e-65 ND / Lus10023774 [exp] 209 / 6e-62 ND 36 / 0.008 Lus10001870 [exp] 206 / 7e-61 ND / Lus10021181 [exp] 207 / 8e-61 ND / Lus10000911 [exp] 186 / 1e-53 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G129900 [exp] 1664 / 0 AT5G15070 1761 / 0.0 Phosphoglycerate mutase-like family protein (.1.2) Potri.017G076400 [exp] 1644 / 0 AT5G15070 1745 / 0.0 Phosphoglycerate mutase-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00328 [flax] [poplar] His_Phos_2 Histidine phosphatase superfamily (branch 2)
Representative CDS sequence Show only first row Show all	>Lus10008307 pacid=23173709 polypeptide=Lus10008307 locus=Lus10008307.g ID=Lus10008307.BGIv1.0 annot-version=v1.0 ATGATAGATCAGCTAAGGACACCCCTTGAAGAACAAGATTCTCATCCTCAACCACAAAAAAGGTTGAGGATGGATAAATATGATATGGAAGTATCAGTTG AAGTAGTAGCTGAAGTGGTGGAAGAGTTATCTTTCTTTGAAGATAATCTAGCTGTTCAGGATGGTAAGTTAGAAGAGTTTGAAAGAGAGAACGTACCCTT CCTAGAAGACAACATATTTTTTCATGATGAGGAGTTAGAAAGATTTGAAGAAGAAAATGATGAAGTATTTGTGAAAAAAGTTTGGGAAGATGAAGAGTCT TTCCATAATGACATTCAAGCTACCGTTGAGCATTCTATCATTTGGCGTCCCCCTCATATTTTGGTCTCACCAAGAGAAACCGAGACCCTTCTTGATTCTT GTTTAATTATGAAGTACTTATTTAAGGAAACTGATAATGAGAGCTTCACACACAAGATTCGAGAAGACACTATTTTGGGATCAAACTTGCATGTCCTAGA GGACTTCTCAAACTACACTATCAAATTAGGGATAGTTGAGGATACTAGTGTTGACACACCATACTACATCTCCCCTCCTCAAGCAGTGGAGACCAAGAAG AGATTTCCACTTAAAGGCACAAACTGGAGCTCACAACCACTTCACCGGCTTCTCCATCAATCTCTGAGGCTGCTACTTGGCATTCAACTCCAATCCTTGA AGAAACTAATGAAATTTAAGGAGGTGTCTTCTGCTCCCATGGGACAAATTCTCGAGAGGTTACAGGCATTTGGCGAATTTGAGGTTATACATTTTGGAGA CAAGGTTATTCTTGAAGATCCAATCGAAAGGTGGCCAATTTGTGACTGTCTGATTGCCTTCTATTCCAGTGGTTATCCCCTTGAAAAGGCAGAGGCATAT GCGGCTTTAAGAAAGCCTTTCCTAATCAATGAATTGGAGCCTCAACACTTGCTTCATGATCGAAGGAAGGTATATGAGCGTCTTGAAAGGTTTGGAATTC CTGTTCCAAGGTATGCCCTTGTGAATCGACAATTTCCTTATCAAGAGCTTGAATATTTTGTTGAGGAAGAAGATTTCGTTGAGGTTCATGGTCAACGATT TTGGAAGCCTTTTGTAGAGAAGCCAGTTCATGGGGACGACCACAGTATCATGATATATTATCCCAGTTCTGCAGGCGGAGGCATGAAGGAACTATTCAGG AAGGTTGGAAATCGTTCCAGTGAGTTCAACCCAGATGTAAGAAGAGTTAGGCGTGAAGGATCTTACATATATGAAGAATTCATGCCAACTGGTGGAACCG ATGTCAAGGTGTATACTGTTGGTCCTGAATATGCGCATGCTGAGGCAAGGAAGTCTCCAGTAGTTGATGGAGTTGTAATGAGAAATCCTGACGGCAAGGA GGTGAGGTATCCAGTGTTGTTGACACCTAATGAGAAGCAAGTGGCGCGAGAAGTTTGCCTTGCTTTTAGGCAAGGGGTATGTGGATTTGATCTTCTGCGT TGTGAAGGACGTTCATATGTTTGTGATGTGAATGGTTGGAGTTTTGTGAAGAATTCTTACAAATACTATGATGATGCTGCTTGTGTTTTGAGGAAGATGT TTCTAGATGCAAAAGCTCCTCACTTATCAACTGCAATTCCACCTACATTACCATGGAAAGTAAATGAACCAGCTCAACCTACTGAAGGATTGACACGGCA AGGAAGTGGAATTATTGGCTCATTTGGGCAGTCTGAGGAGCTACGCTGTGTTATTACAATTATAAGACATGGTGACAGAACTCCCAAGCAGAAGGTGAAG TTGAAGGTTACTGAGGAAAAGCTATTGAACTTGATGTTGAAGTACAATGGGGGAAGACCCAGGGCTGAGACAAAACTGAAAAGTGCTATTCAATTGCAAG ACTTGTTGGATGCCACGCGAATGCTTGTTCCTCGTAGTAGAAAAAAGAAAGGTCACAACCCGTGTGCTTGGTTAGTTAAATGTGCTATGTCTGACTACGA TAAGTGGAGCTTGGCTTGTTTACTGATCTATGGACTGTTCTCGGTCGAGAAAGTGACAGCGAGGCAGAAGACATTGAGCATGCTGAAAAACTACGCCAAG TTAAAGCAGTGCTCGAGGAGGAAAGTCCAGTTAAAGCCGTTAAAGTGGAATAAAGTCCAAAAAAGTAATGGCGAAGGAGAGGAGGAACGGCCTGTTGAAG CCTTGATGGTTCTCAAGTATGGAGGTGTACTTACCCATGCTGGCCGAAAGCAGGCAGAAGAACTGGGTAGATATTTCCGGAATAATATGTATCCAGTATG TATTTCTGAAAGGATAGAATTCAGTGGAGTAAATGATCCTATTCTTTCTCATGATAAATGGGCGAATCTGCAGGGGAAGATGTCTGCTGCTGCATTTGCA AAAGGGCTTCTCGATTTGGAAGGCCAGCTGACTCCAATACTGGTTTCCCTGGTTAGCAAGGATTCTTCCATGTTGGATGGACTTGATGATGCTAGCATTG AGATGGAAGAAGCTAAGGCAAGGCTGAATGAGATAATCACTTCCGGTACAAAGATTGCTACTTGCAATGAATCATCTGAATGTCCGTGGATGACTGATGG GGCTGGACTTCCGCCACATGCCTCTGAACTTCTTCCTAAGCTGGTAAAATTGACCAAGAAGGTTACTGAGCAAGTCAGATTACTTGCAAAATATGAAGAT GAAGACCTCACTGAGACAAGCTCCTACGATGTAGTTCTCCCATATGATCAAGCGAAGGCCCTTGGTAAAACGAACATTGATGTAGACCGAATTGCTGCTG GGTTACCCTGCGGCAGTGAAGGGTTCTTGTTGATGTATGCTCGTTGGAGGAAACTTGAAAGGGACTTGTATAATGAGCGTAAAGAGAGGTTCGACATTAC TCAAATTCCTGATGTTTATGACTCCTGCAAATATGATCTCTTGCACAATGCTCATCTTAATCTAGAAGGACTTGACGAACTTTTTAAAGTCGCTCAGTTT CTTGCAGATGGTGTGATTCCAAATGAGTATGGGATCAATCCAAAGCAGAAACTGAAGATCGGTTCAAAGATTGCACGCCGATTGCTGGGTAAGATCTTGA TTGACCTGAGGAATACCCGCGAGGAAGCAATTAGTGTGGCTGAATTAAAGGGTAGTCAGGACCAAGAGTCTACTTCTACAAAGATTGAAAAGGAGAACTC TGATTATCAACCAAAGCCTTATATTAGAAGTGAAGACAACAGGCGAACTAGCACAGCAAGTGAAATTTCAATTGAGCAGGATGACGATGATGATAAAGAG ACTAAATACCGCTTGGATCCAAAGTATGCTAATGTTAAAACACCAGATCGCCATGTCAAGACGCGGTTGTACTTCACTTCAGAGTCACATATACATTCAC TTATGAATGTTCTTCGTTACTGTAACCTCGACGAGTCTCTTCATGGTGAAGAAAGTCTGGTCTGCGATAATGCATTGGAGAGATTGCACAACACAAAAGA GCTGGACTATATGAGCTATATCGTGTTGAGGATGTTTGAGAACACCGAGGTGGCATTAGAAGACCCGAAAAGGTTCCGCGTAGAAATGACATTTAGCCGC GGTGCAGATTTATCACCACTGGAGGGAAACGATGTGGAGGCCACATCTTTACACCGAGAGCATACGCTTCCTATAATGGGTCCAGAACGACTGCAAGAGG TAGGATCATATCTGACATTTGAGAAGATGGAAATGATGATTCGGCAGTTTGCGATGCCGGCAGAAGATTTTCCACCACCTGCAACACCGGCAGGTTTCTC AGGCTACTTCTCGAAAAGCGCTGCTGTGCTGGAGCGCCTGGTTAATCTCTGGCGATTTAACAAGCAAGACAAGCACGTTGCTGCTGCTAACGGGAAGTAA
AA sequence Show only first row Show all	>Lus10008307 pacid=23173709 polypeptide=Lus10008307 locus=Lus10008307.g ID=Lus10008307.BGIv1.0 annot-version=v1.0 MIDQLRTPLEEQDSHPQPQKRLRMDKYDMEVSVEVVAEVVEELSFFEDNLAVQDGKLEEFERENVPFLEDNIFFHDEELERFEEENDEVFVKKVWEDEES FHNDIQATVEHSIIWRPPHILVSPRETETLLDSCLIMKYLFKETDNESFTHKIREDTILGSNLHVLEDFSNYTIKLGIVEDTSVDTPYYISPPQAVETKK RFPLKGTNWSSQPLHRLLHQSLRLLLGIQLQSLKKLMKFKEVSSAPMGQILERLQAFGEFEVIHFGDKVILEDPIERWPICDCLIAFYSSGYPLEKAEAY AALRKPFLINELEPQHLLHDRRKVYERLERFGIPVPRYALVNRQFPYQELEYFVEEEDFVEVHGQRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFR KVGNRSSEFNPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQVAREVCLAFRQGVCGFDLLR CEGRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLDAKAPHLSTAIPPTLPWKVNEPAQPTEGLTRQGSGIIGSFGQSEELRCVITIIRHGDRTPKQKVK LKVTEEKLLNLMLKYNGGRPRAETKLKSAIQLQDLLDATRMLVPRSRKKKGHNPCAWLVKCAMSDYDKWSLACLLIYGLFSVEKVTARQKTLSMLKNYAK LKQCSRRKVQLKPLKWNKVQKSNGEGEEERPVEALMVLKYGGVLTHAGRKQAEELGRYFRNNMYPVCISERIEFSGVNDPILSHDKWANLQGKMSAAAFA KGLLDLEGQLTPILVSLVSKDSSMLDGLDDASIEMEEAKARLNEIITSGTKIATCNESSECPWMTDGAGLPPHASELLPKLVKLTKKVTEQVRLLAKYED EDLTETSSYDVVLPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNERKERFDITQIPDVYDSCKYDLLHNAHLNLEGLDELFKVAQF LADGVIPNEYGINPKQKLKIGSKIARRLLGKILIDLRNTREEAISVAELKGSQDQESTSTKIEKENSDYQPKPYIRSEDNRRTSTASEISIEQDDDDDKE TKYRLDPKYANVKTPDRHVKTRLYFTSESHIHSLMNVLRYCNLDESLHGEESLVCDNALERLHNTKELDYMSYIVLRMFENTEVALEDPKRFRVEMTFSR GADLSPLEGNDVEATSLHREHTLPIMGPERLQEVGSYLTFEKMEMMIRQFAMPAEDFPPPATPAGFSGYFSKSAAVLERLVNLWRFNKQDKHVAAANGK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15070			Phosphoglycerate mutase-like f...		Lus10008307 [exp]	0	1
AT1G79720			Eukaryotic aspartyl protease f...		Lus10024098 [exp]	1.0	0.9130
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10005927 [exp]	3.7	0.8251
AT2G37678		PAT3, FRY1, FHY...	PHYTOCHROME A SIGNAL TRANSDUCT...		Lus10012123 [exp]	5.1	0.8689
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10015231 [exp]	6.9	0.8538
AT4G19985			Acyl-CoA N-acyltransferases (N...		Lus10003689 [exp]	7.7	0.7597
AT4G35840			RING/U-box superfamily protein...		Lus10041859 [exp]	8.9	0.8099
AT2G27310			F-box family protein (.1)		Lus10028024 [exp]	8.9	0.8385
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Lus10037817 [exp]	9.5	0.8227
AT3G12150			unknown protein		Lus10023826 [exp]	11.7	0.8092
AT2G25840		OVA4	ovule abortion 4, Nucleotidyly...		Lus10005494 [exp]	12.0	0.8344

Compare expression of checked genes

Lus10008307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.