Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41210 347 / 4e-122 GSTU12, GST10, ATGSTT1 glutathione S-transferase THETA 1 (.1) AT5G41240 341 / 6e-115 GST10B, ATGSTT2 glutathione S-transferase THETA 2 (.1) AT5G41220 329 / 3e-110 GST10C, ATGSTT3 glutathione S-transferase THETA 3 (.1) AT2G30870 84 / 1e-19 ERD13, ATGSTF4, ATGSTF10 EARLY DEHYDRATION-INDUCED 13, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 10, glutathione S-transferase PHI 10 (.1) AT2G30860 79 / 2e-17 GLUTTR, ATGSTF7, ATGSTF9 glutathione S-transferase PHI 9 (.1.2) AT3G03190 65 / 2e-12 ATGSTF6, ATGSTF11 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) AT1G02930 63 / 7e-12 ATGST1, GST1, ERD11, ATGSTF3, ATGSTF6 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) AT1G02920 62 / 3e-11 ATGST11, GST11, ATGSTF8, ATGSTF7 ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 11, glutathione S-transferase 7 (.1) AT5G17220 59 / 2e-10 GST26, TT19, ATGSTF12 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) AT2G47730 59 / 6e-10 GST6, ATGSTF5, ATGSTF8 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000606 [exp] 444 / 2e-160 AT5G41240 351 / 1e-123 glutathione S-transferase THETA 2 (.1) Lus10008021 [exp] 439 / 2e-158 AT5G41210 348 / 1e-122 glutathione S-transferase THETA 1 (.1) Lus10008020 [exp] 265 / 1e-89 AT5G41210 174 / 4e-54 glutathione S-transferase THETA 1 (.1) Lus10026643 [exp] 77 / 6e-17 AT2G47730 269 / 2e-91 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) Lus10030414 [exp] 76 / 2e-16 AT2G47730 267 / 1e-90 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1) Lus10029815 [exp] 75 / 5e-16 AT2G30860 332 / 2e-117 glutathione S-transferase PHI 9 (.1.2) Lus10020735 [exp] 74 / 9e-16 AT2G30860 334 / 4e-118 glutathione S-transferase PHI 9 (.1.2) Lus10004151 [exp] 72 / 8e-15 AT2G30860 194 / 1e-62 glutathione S-transferase PHI 9 (.1.2) Lus10037121 [exp] 66 / 1e-12 AT2G47730 243 / 2e-81 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G105600 [exp] 383 / 4e-136 AT5G41210 358 / 1e-126 glutathione S-transferase THETA 1 (.1) Potri.003G125800 [exp] 345 / 1e-121 AT5G41210 327 / 2e-114 glutathione S-transferase THETA 1 (.1) Potri.002G015200 [exp] 66 / 1e-12 AT3G03190 208 / 4e-68 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.017G138800 [exp] 63 / 9e-12 AT5G17220 265 / 1e-90 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Potri.004G232600 [exp] 63 / 1e-11 AT2G02390 306 / 2e-106 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Potri.002G207672 [exp] 62 / 3e-11 AT3G62760 302 / 2e-105 Glutathione S-transferase family protein (.1) Potri.002G207479 [exp] 61 / 5e-11 AT1G02930 267 / 1e-91 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207093 [exp] 59 / 2e-10 AT1G02930 263 / 5e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207286 [exp] 58 / 5e-10 AT1G02930 263 / 4e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G015100 [exp] 51 / 2e-07 AT3G03190 196 / 2e-63 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10008308 pacid=23173701 polypeptide=Lus10008308 locus=Lus10008308.g ID=Lus10008308.BGIv1.0 annot-version=v1.0 ATGACGCTCAAAGTGTATGCAGATCGGATTTCCGAGCCTGGCAGGGCCGTCATTCTCTTCTGCAAGCTGAATAGAATCAACTTTGAGGAGATCAAAGTGG ACTTGACCAAGCGTCAACATTTATCTCCTGAATATGCAGAAATAAACCCTATGAAGAAGGTTCCTGCTATTGTTGATGGAAGATTCAAGCTGTTTGAGAG CCATGCAATCCTTATCTACCTAGCTTGCGTATTTCCAGGAGTTGCCGATCACTGGTATCCAGCTGATCTTTTCAGAAGAGCTAAGATTCAGTCAGTCCTT GACTGGCATCACTACAACTTGCGCGGCGGACCAGTTGGATTTGTTTTCAACAAGGCTTTAGCGCCTGCATTTGGACTGCCATTGAATCCTCGAGCAGCTG CACAAGGTGAAAAGAAATTAACTTCAGCCTTATCTAAGTTGGAATCTTTCTGGCTCAAGGGTAGTGGGAAATACTTGCTTGGTGGGAATCAGCCATCTTT AGCAGATCTTAGCCTCGTATGTGAGTTAATGCAATTGGAGGTTTTGGATGAAAGAGACCGGAACCGAGTTCTTGGCCCTCACAAGAAGGTTGAGCAATGG ATCAAGGACACAAAGCTTGCAACTCAACCTCATTTTGATGAAGTGCACCAGGTTCTCTTCAAAGTGAAAGAGAAGCTCAAGACGTTGCAGTCCATGGGAG CAAACGATGACACTGAATCTAGCTTAAACAAAAAAGTTCACTCCCGGATGTAG
AA sequence Show only first row Show all	>Lus10008308 pacid=23173701 polypeptide=Lus10008308 locus=Lus10008308.g ID=Lus10008308.BGIv1.0 annot-version=v1.0 MTLKVYADRISEPGRAVILFCKLNRINFEEIKVDLTKRQHLSPEYAEINPMKKVPAIVDGRFKLFESHAILIYLACVFPGVADHWYPADLFRRAKIQSVL DWHHYNLRGGPVGFVFNKALAPAFGLPLNPRAAAQGEKKLTSALSKLESFWLKGSGKYLLGGNQPSLADLSLVCELMQLEVLDERDRNRVLGPHKKVEQW IKDTKLATQPHFDEVHQVLFKVKEKLKTLQSMGANDDTESSLNKKVHSRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Lus10008308 [exp]	0	1
AT5G10710			unknown protein		Lus10026945 [exp]	10.7	0.7384
AT5G63440			Protein of unknown function (D...		Lus10016760 [exp]	14.6	0.7487
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Lus10038448 [exp]	19.4	0.7347
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10017610 [exp]	21.0	0.6934
AT5G45030			Trypsin family protein (.1.2)		Lus10017140 [exp]	26.2	0.7053
AT5G44450			methyltransferases (.1)		Lus10042846 [exp]	26.3	0.6413
AT4G14145			unknown protein		Lus10023526 [exp]	33.9	0.7213
AT1G25290		ATRBL10	RHOMBOID-like protein 10 (.1.2...		Lus10022969 [exp]	59.7	0.6790
AT2G04845			Acyl-CoA N-acyltransferases (N...		Lus10012349 [exp]	63.2	0.7017
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10022815 [exp]	64.4	0.7023

Compare expression of checked genes

Lus10008308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.