Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63440 1436 / 0 HMA5 heavy metal atpase 5 (.1) AT5G44790 844 / 0 HMA7, RAN1 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) AT4G33520 365 / 8e-111 AtHMAC6, HMA6, PAA1 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) AT5G21930 352 / 2e-106 ATHMA8, HMA8, PAA2 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) AT4G30110 252 / 3e-70 ATHMA2, HMA2 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) AT2G19110 231 / 2e-62 ATHMA4, HMA4 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) AT4G30120 155 / 1e-39 ATHMA3, HMA3 A. THALIANA HEAVY METAL ATPASE 3, heavy metal atpase 3 (.1) AT4G37270 145 / 2e-35 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) AT2G41560 117 / 2e-26 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT3G57330 115 / 5e-26 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031273 [exp] 959 / 0 AT1G63440 1040 / 0.0 heavy metal atpase 5 (.1) Lus10036225 [exp] 788 / 0 AT5G44790 1402 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10038364 [exp] 786 / 0 AT5G44790 1441 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10031840 [exp] 518 / 5e-169 AT5G44790 573 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10023777 [exp] 357 / 5e-108 AT4G33520 1180 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10025467 [exp] 249 / 8e-69 AT4G30110 1073 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) Lus10038070 [exp] 242 / 5e-67 AT5G21930 1146 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Lus10006955 [exp] 242 / 2e-66 AT2G19110 1072 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) Lus10011510 [exp] 160 / 7e-41 AT4G37270 1000 / 0.0 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G125600 [exp] 1580 / 0 AT1G63440 1527 / 0.0 heavy metal atpase 5 (.1) Potri.001G105800 [exp] 1579 / 0 AT1G63440 1538 / 0.0 heavy metal atpase 5 (.1) Potri.003G125700 [exp] 1431 / 0 AT1G63440 1395 / 0.0 heavy metal atpase 5 (.1) Potri.001G019100 [exp] 996 / 0 AT1G63440 1043 / 0.0 heavy metal atpase 5 (.1) Potri.001G158900 [exp] 845 / 0 AT5G44790 1465 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.003G075700 [exp] 838 / 0 AT5G44790 1526 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.003G024000 [exp] 370 / 2e-112 AT4G33520 1078 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.001G205400 [exp] 358 / 3e-108 AT4G33520 1066 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.018G047800 [exp] 349 / 1e-104 AT5G21930 1193 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Potri.006G076900 [exp] 249 / 2e-68 AT4G30110 1051 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase CL0137 [flax] [poplar] PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10008309 pacid=23173732 polypeptide=Lus10008309 locus=Lus10008309.g ID=Lus10008309.BGIv1.0 annot-version=v1.0 ATGGCGACTAAGTTCCTAGTATTGCCGTGCCTTGGTGACGATGATTGTATTGATAATTTGTCGCCTCCCCCGCGGTACCCTTCGATGCCCAGATACCCAA AAGGAGTTGCCGTACAAGAAACACAGGGTTCGGAGTCCAAAGCGGTGTTTTCCGTGATGGGAATGACTTGCTCCTCCTGCGCCGGCTCCGTCGAGAAAGC CGTCAAGCGTCTTCCCGGAATCCTGGAGGCCGCCGTTGATGTTGTCAACAACCGAGCTCAAGTCCTCTTCTACCCCACCTTCGTCAATGAGGAGACTATT CGACAAACCATTGAAGATGCTGGGTTCCAGGCTCGATTGATCAAATGCGAAAGCAGTGCCGATCACAGCTCCTCTCAAGTATGCCGTATACACATCATCG GGATGTCCTGCACGTCCTGCTCTTCCACAATCGAACAAGCTTTACGAGCGATTCAAGGGGTACAAATGGCTCAAGTAGCCTTAGCCACTGAGCAAGCATT AATTCACTATGATCCCACAATCCTTAACCATGATCAGCTCCTGAGAGCCATTGATGCCACCGGTTTCGAGGCCATACTGATCACAAGTACTGGTAACCAG TTGGACAAGATACAGCTTAGAGTTGAAGGGGTCATGACTGATAATAACTCACTGCGAATGATTGAGAAAGCTCTTCAGGCACTCCCTGGAGTTCAAACCA TTGACATTGATCCTGACCTCCACAAAATCACCATTGCTTATAGGCCAGACTCTACTGGTCCTAGGAATTTTATCAAAGTGATTGAATCGACTGGGACGGG TCGATTCAAGGCTATGATATTTGATGAAGGAGGAGAAGGAAGAGATAGTCACAGGAAAGAGGAAATCAGGCAATACTATAATTCCTTTTTGTGGAGTTTG GTCTTCACTGTTCCTGTGTTTCTGATAGCCATGGTTTTCATGTACATCCCTGGAATCAAGCATGGACTGGATACCAAGATAGTCAATATGCTTACTGTTG GAGCCGTTCTAAGGTGGGCACTGTCCACTCCGGTGCAGTTTGTCGTAGGGAGACGATTCTATACTGGTTCGTACAAAGCATTGCGCCATGGCTCTGCTAA TATGGATGTGCTTATTGCTTTGGGGACAAATGCAGCTTACTTTTATTCACTCTACTCCGTCTTCAGAGCTGCCACTTCTCCGAAATTCGAGAGCATGGAT TTCTTCGAGACAAGCTCCATGCTCATATCGTTCATTCTCCTGGGGAAGTATCTGGAGGTTCTGGCTAAAGGCAAGACATCTGAGGCCATTGCTAAGCTTA TGGATTTAACACCTGGAACTGCTATGCTGTTGACTCTAGATGATGAAGGTAATGTAATCGGTGAAGAAGAGATTGACAGCCGATTGATTCAGAAGAATGA TGTGATCAAGATCATACCTGGTGCAAAAGTGGCCTCGGATGGGTTTGTGATATGGGGACAAAGCCATGTGAATGAGAGTATGATTACAGGAGAAGCTCAC CCTGTGGCAAAGAGAACTGGCGATGCGGTGATTGGTGGAACCGTGAACGAGAATGGAGTATTGCATATTAAAGCAACGAGAGTTGGATCGGAGGGTGCTC TTTCCCAGATTGTTCGTCTAGTTGAGTCTGCTCAGATGGCTAAAGCTCCTGTTCAGAAGTTTGCTGATCGCATTTCCAAGTACTTTGTTCCTCTGGTGAT TACACTTTCCTTCTCCACTTGGCTTGCATGGTTTGTGGCTGGTAAGTTGCACGGATACCCTAAATCTTGGATCCCACGTTCCATGGACAGCTTCCAGCTA GCTCTCCAGTTTGGAATCTCTGTAATGGTCATAGCATGCCCATGTGCTCTTGGACTTGCAACTCCTACTGCTGTCATGGTTGGCACAGGAGTCAGTGCAT CTCAAGGAGTCCTTATTAAAGGCGGCCAAGCATTGGAAAGTGCACACAGGGTTGACTGCATCGTGTTTGACAAGACGGGAACTCTTACAGTAGGAAAACC AGTGTTGGTTAACACAAAGCTCCTAAAAAATGTGGCGCTAAGAGATTTCTATCAACTTGTTGCTGCAGCAGAGTCAAACAGCGAGCACCCTTTAGCCAAG GCCATTGTTGAGTATGCGAAGAAGTTCAGGGAAGATGAAGAAAATCCTGCCTGGCCAGAAGCGCAAGATTTTATTTCCATCACTGGTCATGGAGTTAAAG CAATTGTCTGCAACAAGGAAGTCCTAGTTGGGAACAAGAGCTTGATGCTTGATGAAAAAATTGCCATTCCGATTGATGCTGAAGAGATACTGGCAGAAGC AGAAGCAATGGCTCAAACTGGAATTCTAGTATCTATAGACAGGGAGGTGACTGGAGTAATAGCCATCTCTGACCCGCTGAAACCAGGCGCACCGGAAGTT ATCTTAATCCTCACATCTATGGGGATTCAGAGCATAATAGTAACAGGTGATAACTGGGGGACTGCCAGTTCCATAGCCAGGGAAGTCGGAATTGACATTG TTGTTGCAGAAGCCAAACCTGATCAGAAAGCTGAGAAAGTTAAGGAGCTCCAGGCAGCAGGCCGTGTGGTGGCAATGGTAGGAGATGGTATAAACGATTC ACCAGCACTGGTTGCAGCAGACGTTGGAATGGCAATCGGCGCAGGAACAGATGTTGCTATTGAAGCAGCTGACATTGTTCTGATGAAGAGCAACTTGGAG GATGTGATCACTGCAATAGACCTTTCGAGGAAGACATTTTCACGTATCCGTCTGAACTACATGTGGGCTCTGGGTTACAATCTCGTTGGCATTCCAATAG CTGCTGGAGCGCTTTTCCCTGGTACTGGATTCCGCTTGCCACCGTGGATTGCTGGTGCTGCAATGGCAGCATCTTCAGTCAGTGTAGTCGTGTGTTCTCT CATGTTGAAGAATTACCAGAGACATAAGAAGCTAGAAAGCCTGCAGATTAGAGGAATAAAGATCGAGTGA
AA sequence Show only first row Show all	>Lus10008309 pacid=23173732 polypeptide=Lus10008309 locus=Lus10008309.g ID=Lus10008309.BGIv1.0 annot-version=v1.0 MATKFLVLPCLGDDDCIDNLSPPPRYPSMPRYPKGVAVQETQGSESKAVFSVMGMTCSSCAGSVEKAVKRLPGILEAAVDVVNNRAQVLFYPTFVNEETI RQTIEDAGFQARLIKCESSADHSSSQVCRIHIIGMSCTSCSSTIEQALRAIQGVQMAQVALATEQALIHYDPTILNHDQLLRAIDATGFEAILITSTGNQ LDKIQLRVEGVMTDNNSLRMIEKALQALPGVQTIDIDPDLHKITIAYRPDSTGPRNFIKVIESTGTGRFKAMIFDEGGEGRDSHRKEEIRQYYNSFLWSL VFTVPVFLIAMVFMYIPGIKHGLDTKIVNMLTVGAVLRWALSTPVQFVVGRRFYTGSYKALRHGSANMDVLIALGTNAAYFYSLYSVFRAATSPKFESMD FFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMDLTPGTAMLLTLDDEGNVIGEEEIDSRLIQKNDVIKIIPGAKVASDGFVIWGQSHVNESMITGEAH PVAKRTGDAVIGGTVNENGVLHIKATRVGSEGALSQIVRLVESAQMAKAPVQKFADRISKYFVPLVITLSFSTWLAWFVAGKLHGYPKSWIPRSMDSFQL ALQFGISVMVIACPCALGLATPTAVMVGTGVSASQGVLIKGGQALESAHRVDCIVFDKTGTLTVGKPVLVNTKLLKNVALRDFYQLVAAAESNSEHPLAK AIVEYAKKFREDEENPAWPEAQDFISITGHGVKAIVCNKEVLVGNKSLMLDEKIAIPIDAEEILAEAEAMAQTGILVSIDREVTGVIAISDPLKPGAPEV ILILTSMGIQSIIVTGDNWGTASSIAREVGIDIVVAEAKPDQKAEKVKELQAAGRVVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLMKSNLE DVITAIDLSRKTFSRIRLNYMWALGYNLVGIPIAAGALFPGTGFRLPPWIAGAAMAASSVSVVVCSLMLKNYQRHKKLESLQIRGIKIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Lus10008309 [exp]	0	1
AT3G22640		PAP85	cupin family protein (.1)		Lus10022072 [exp]	1.4	0.9707
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10042648 [exp]	4.9	0.9532
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10010437 [exp]	6.0	0.9527
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10021133 [exp]	6.5	0.9411
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031834 [exp]	7.5	0.9501
AT3G49070			Protein of unknown function (D...		Lus10039258 [exp]	14.0	0.9420
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030893 [exp]	14.6	0.8526
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10039069 [exp]	15.5	0.9333
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10009313 [exp]	15.9	0.9402
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10032425 [exp]	16.1	0.9406

Compare expression of checked genes

Lus10008309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.