Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63430 855 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT5G41180 747 / 0 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G45840 293 / 5e-89 Leucine-rich repeat protein kinase family protein (.1.2) AT4G18640 257 / 2e-75 MRH1 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) AT1G31420 213 / 6e-60 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT5G58540 200 / 8e-58 Protein kinase superfamily protein (.1.2.3) AT5G62710 195 / 2e-53 Leucine-rich repeat protein kinase family protein (.1) AT3G56050 190 / 9e-53 Protein kinase family protein (.1.2) AT2G40270 189 / 2e-52 Protein kinase family protein (.1.2) AT5G45780 190 / 8e-52 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008018 [exp] 1295 / 0 AT1G63430 846 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10001489 [exp] 1082 / 0 AT1G63430 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008486 [exp] 1078 / 0 AT1G63430 878 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017439 [exp] 290 / 7e-88 AT5G45840 457 / 1e-152 Leucine-rich repeat protein kinase family protein (.1.2) Lus10007516 [exp] 286 / 3e-86 AT5G45840 463 / 4e-155 Leucine-rich repeat protein kinase family protein (.1.2) Lus10025400 [exp] 280 / 4e-84 AT5G45840 608 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10015277 [exp] 260 / 5e-77 AT5G45840 548 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031290 [exp] 236 / 5e-68 AT4G18640 457 / 7e-153 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Lus10031860 [exp] 229 / 2e-65 AT5G45840 491 / 4e-166 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G124800 [exp] 979 / 0 AT1G63430 858 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G106600 [exp] 970 / 0 AT1G63430 839 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.011G067400 [exp] 330 / 2e-102 AT4G18640 678 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.004G058100 [exp] 316 / 4e-97 AT4G18640 694 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.008G072100 [exp] 297 / 8e-91 AT2G40270 451 / 2e-153 Protein kinase family protein (.1.2) Potri.010G185300 [exp] 261 / 3e-77 AT2G40270 434 / 1e-146 Protein kinase family protein (.1.2) Potri.001G280200 [exp] 241 / 1e-69 AT2G40270 430 / 2e-144 Protein kinase family protein (.1.2) Potri.009G075400 [exp] 241 / 1e-69 AT2G40270 449 / 9e-152 Protein kinase family protein (.1.2) Potri.003G105000 [exp] 201 / 6e-56 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.012G071100 [exp] 198 / 1e-54 AT5G62710 943 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10008310 pacid=23173719 polypeptide=Lus10008310 locus=Lus10008310.g ID=Lus10008310.BGIv1.0 annot-version=v1.0 ATGAGATCATACGTTCAGTTACAGCTTCTTTCTGTTGTTGCCTCTGCAGTTCTCTTTGTGGCTTGCCAGTCCTTTCCACAGGACGAAGTTTCTGGTCTGA AGGGATTCAAGGAAGCAATATATGAAGACTCTCTTCTAATTTTGTCCAGCTGGAATGCTCTAGATACGAATCCTTGTGAGTGGTCTGGTGTATATTGCTC TTCTACTGGAGACCATGTTATCAAGATAAACATATCTGGATCATCTCTTGGTGGGTTTATTTCTCCAGATTTGAGCAGGATTGCATACTTGCAGGAACTT ATCTTGCATGGTAACAATCTGATTGGAACCATCCCGAAAGAGCTGGGCATGCTTAAGCAGCTTAAAAGGTTGGATTTAGGAGCTAATCAACTCTCTGGTC CAATTCCTCCAGAGCTGGCAACTATATCAGGCATCATGAAAATAAACCTCCAGGCCAATTGGCTAACTGGGAGTCTGCCTTCTGAGTTTGGCAGTTTAAA ATACCTTCAGGAACTTTTCCTAGATAGGAACAGACTCCAGGGTACTGTTCCAGCTAGTAAAAGTTTCGCTTCCAACATTCATGGAATGTACTCTTCAGGG GGGAACATTACTGGTCTGTGTCAAGCATCTAACCTGAAAGTAGCGGACTTCTCTTACAATTTCTTTACTGGACCCATACCTAAATGCTTGGGTCACCTTC CACGCGCAAGTTTTCAAGGCAACTGCCTCCAGAACAAGGAAACAAAGCAGCGCACTGCTGCACAATGCACTGGTCCCGAACCTGTCAGAAACCATGGAGC CTTTAACCCCAAGCACCACCAGCCTGCTGAAGCTGTTTCCGAGGAGCATCAGGGAAAATCAAAACCAGTATGGCTATTGGTTTTGGAAGTAGTGACAGGA ACCATGGTGGGAGCTGTCTTTGTCATGTTTCTTTTGACTGCCTTCCAGAGATGGAATACCAAATCTGCTATTATAATGCCTTGGAAGAAGTCAGCAAGTC GGAAGGAAAATGTGACCGTATACATAGACTCTGAGATGCTGAAAGACGTGGCGAATTTCAACAGACAAGAACTGGAGATAGCATGTGAAGAATTCAGTAA TATCATCGACTCTTCCCCAGATAGTTTGGTTTATAAAGGGAACATGAAAGGAGGTCCTGAGATTGCTGTCATATCTTTCTGTATCAAAGAGGAACAATGG AGTGGCTACCTTGAACTCTATTTTCAGAGGGAGGTTGCAGATTTGGCAAGATTGAATCATGAGAATGCCGGGAAGTTGCTTGGTTATTGTAAAGAGAGCA GTCCATTTACTAGGATGCTAGTTTTTGAATATTCGTCGAATGGAACCTTAAATGAGCACCTTCATTGTGGAGAGGAATGTCAATTATCTTGGACGAGGCG CATGAAAATTGTAATAGGCATCGCTCGTGGTCTTAAATACCTTCACACAGAACTTGACCCATCATTCACAATATCAGAGTTGAATTCTAGTGCTGTTTAC CTAACAGATGACTTCTCCCCCAAGCTGGTGGATTTTGAGAGTTGGAAGAGCATTCTTTCCAGATCAGAAAAGATCTCCGGCTCCATTGGAGGCCAAGGTG CCATTTGTGTGCTCCCAAATTCAATGGAAGCACGCCACCTTGACATTCAAGGCAATGTCTATGCTTTCGGCATACTGTTGCTTGAAATAATCAGTGGCAG GCCTGCATACTGTAAAGACAAAGAGTCCATAGTCGACTGGGCTAAGGACATGCTTGATGTCCCGGAGGCAATGTCTTATATGATAGATCCTGAGCTCAAG AATTTCAAATACGAGGACCTGAAAGCTATATGTGAGGTGGTGACCCTGAGCATCCATCCAGATGCGAATAAAAGACCATCAATGCGGGAGGTATGCACGA TGCTGGAAAGCAGGATTGACACATCTGTGTTTTTCGACTTTAAGGCATCTTCATTAGCATGGGCTGAGCATGCATTGTCATCACACGATTTTTCCGACAT CGACGATGGCTTTGACCTCAATGTTGGTGAGAGCGCCGAGGAGGAGCTGGCATCGGTGCAGCTAGTCCTTGAGCTTTTATCATGGGAGTCAAAGTCATCC AAGAAGGACGGCTCTGGCATAACAATGATGCACAAACAGGTTAGTCAAGAGAGACTTGCCCAACTACATAATTTAATTGTCAGCTCTGCTTGA
AA sequence Show only first row Show all	>Lus10008310 pacid=23173719 polypeptide=Lus10008310 locus=Lus10008310.g ID=Lus10008310.BGIv1.0 annot-version=v1.0 MRSYVQLQLLSVVASAVLFVACQSFPQDEVSGLKGFKEAIYEDSLLILSSWNALDTNPCEWSGVYCSSTGDHVIKINISGSSLGGFISPDLSRIAYLQEL ILHGNNLIGTIPKELGMLKQLKRLDLGANQLSGPIPPELATISGIMKINLQANWLTGSLPSEFGSLKYLQELFLDRNRLQGTVPASKSFASNIHGMYSSG GNITGLCQASNLKVADFSYNFFTGPIPKCLGHLPRASFQGNCLQNKETKQRTAAQCTGPEPVRNHGAFNPKHHQPAEAVSEEHQGKSKPVWLLVLEVVTG TMVGAVFVMFLLTAFQRWNTKSAIIMPWKKSASRKENVTVYIDSEMLKDVANFNRQELEIACEEFSNIIDSSPDSLVYKGNMKGGPEIAVISFCIKEEQW SGYLELYFQREVADLARLNHENAGKLLGYCKESSPFTRMLVFEYSSNGTLNEHLHCGEECQLSWTRRMKIVIGIARGLKYLHTELDPSFTISELNSSAVY LTDDFSPKLVDFESWKSILSRSEKISGSIGGQGAICVLPNSMEARHLDIQGNVYAFGILLLEIISGRPAYCKDKESIVDWAKDMLDVPEAMSYMIDPELK NFKYEDLKAICEVVTLSIHPDANKRPSMREVCTMLESRIDTSVFFDFKASSLAWAEHALSSHDFSDIDDGFDLNVGESAEEELASVQLVLELLSWESKSS KKDGSGITMMHKQVSQERLAQLHNLIVSSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63430			Leucine-rich repeat protein ki...		Lus10008310 [exp]	0	1
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10028421 [exp]	1.0	0.8881
AT1G22790			unknown protein		Lus10028691 [exp]	3.2	0.8191
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10041875 [exp]	4.2	0.8450
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10033987 [exp]	6.0	0.8532
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10012789 [exp]	9.8	0.8155
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10007748 [exp]	11.0	0.7928
AT3G52720		CAH1, ATACA1, A...	A. THALIANA ALPHA CARBONIC ANH...		Lus10021356 [exp]	11.4	0.7532
AT1G26940			Cyclophilin-like peptidyl-prol...		Lus10036733 [exp]	13.0	0.7717
AT4G34530	bHLH	bHLH063, CIB1	cryptochrome-interacting basic...		Lus10040448 [exp]	16.2	0.7996
AT5G18460			Protein of Unknown Function (D...		Lus10004766 [exp]	17.9	0.7849

Compare expression of checked genes

Lus10008310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.