Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008314 [exp] 227 / 8e-78 ND / Lus10028050 [exp] 225 / 3e-77 ND 36 / 0.004 Lus10035753 [exp] 225 / 4e-76 ND / Lus10028053 [exp] 226 / 2e-73 AT3G11080 120 / 8e-29 receptor like protein 35 (.1) Lus10003753 [exp] 127 / 9e-39 ND / Lus10029618 [exp] 124 / 3e-37 ND / Lus10032770 [exp] 122 / 3e-36 ND / Lus10003755 [exp] 118 / 6e-35 ND 37 / 0.002 Lus10029617 [exp] 117 / 1e-34 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G067000 [exp] 43 / 2e-05 AT3G60720 306 / 8e-105 plasmodesmata-located protein 8 (.1) Potri.005G208400 [exp] 37 / 0.001 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008311 pacid=23178480 polypeptide=Lus10008311 locus=Lus10008311.g ID=Lus10008311.BGIv1.0 annot-version=v1.0 ATGGATTACGTGTCGAAATCAGCGGTGGCAGTGATTCTGCTGATGGGTATTTTGAGTACTCTTGTTGTCGACGCCAAACTTCCAGACAAGAGTATCATCA GCGGACCTGACTGTTATGGTAAATCCGATAGTGCTTTGTACGACAGGAATGTGGCCCGCCTTATTAACATTTTTGTTGACGGGACGAAGAACATCCACAG GGGTTATCACGCAGACTACGAGTACAAGCAGAACTTTCCCGATTCGGACTCCGGCTCCGTCACTGGCGGGGCGACTTGCGATCGACAGTTGTGGAAGTTG GATTGCTGGTCGTGTCTTGTCACTGCGAAGAACAAGATCAACGACAACTGCGGGCATACCCATAATGCGGAAGTTAAGCTTAAAGATTGCTCTCTTTGGT TCAAAAAGATAGAATGA
AA sequence Show only first row Show all	>Lus10008311 pacid=23178480 polypeptide=Lus10008311 locus=Lus10008311.g ID=Lus10008311.BGIv1.0 annot-version=v1.0 MDYVSKSAVAVILLMGILSTLVVDAKLPDKSIISGPDCYGKSDSALYDRNVARLINIFVDGTKNIHRGYHADYEYKQNFPDSDSGSVTGGATCDRQLWKL DCWSCLVTAKNKINDNCGHTHNAEVKLKDCSLWFKKIE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008311 [exp]	0	1
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10007410 [exp]	25.8	0.6475
AT5G46230			Protein of unknown function, D...		Lus10013912 [exp]	28.1	0.6467
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10025074 [exp]	47.4	0.6313
					Lus10040759 [exp]	76.8	0.6280
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10040202 [exp]	103.9	0.6271
AT5G43650	bHLH	BHLH92, bHLH092	basic helix-loop-helix (bHLH) ...		Lus10008804 [exp]	122.8	0.6089
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10026372 [exp]	143.5	0.6034

Compare expression of checked genes

Lus10008311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.