Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02210 53 / 5e-08 unknown protein AT2G24960 44 / 4e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042596 [exp] 138 / 2e-41 AT4G02210 44 / 2e-05 unknown protein Lus10013570 [exp] 119 / 3e-33 ND / Lus10037335 [exp] 77 / 3e-16 AT5G27260 69 / 7e-13 unknown protein Lus10032874 [exp] 70 / 5e-14 AT5G27260 53 / 1e-07 unknown protein Lus10012077 [exp] 70 / 5e-14 AT5G27260 50 / 5e-07 unknown protein Lus10035759 [exp] 70 / 7e-14 AT5G27260 74 / 6e-15 unknown protein Lus10019607 [exp] 66 / 1e-12 ND / Lus10007175 [exp] 63 / 1e-11 AT5G27260 67 / 2e-12 unknown protein Lus10014160 [exp] 62 / 2e-11 ND 47 / 6e-06
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G265900 [exp] 50 / 6e-07 AT2G24960 761 / 0.0 unknown protein Potri.002G200600 [exp] 49 / 1e-06 AT4G02210 471 / 1e-163 unknown protein Potri.013G025200 [exp] 43 / 0.0001 AT2G24960 514 / 2e-168 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008312 pacid=23178491 polypeptide=Lus10008312 locus=Lus10008312.g ID=Lus10008312.BGIv1.0 annot-version=v1.0 ATGGTTGAATCAAGTGTAGGCGGGGCTAAGCGAGGGAGTAAAAATCTCGTGTGGACACCATCAATGGATAATTACTTAATTGATGTCATGTTGGAAATGG TGAAGAACAAGCAATATCAAAATGGAACTTTCAAACCTGTAACGTACAAAGAGATGGAAAGGCAGCTAAATTTGCTTGATCCTTTATGTGAAGTGAAGGT GAGCCCAAAAATATTATCTCGGTTGAAGACTTTAAAAAAGAAGTTCAATGGAGTTAAGGAGTTGAGAAATTTAAGCGGCGCTGGATGGAGCAAGTCGAAA TCGACCCTATCATATATAACGAATACGTCAAGCAAACCGAAATATAAGAGGCATCGTGTTGTCGAGGCTAAGACTGAATTGACGAGTGTCGAAAAGGAGC TACTTGATGGATTGAAGCCAATCATGGAGGTTTTATCAAGCTTGGGAGAAGCACTACGAAGTGAAATTGTTGTCGAACAGGAATTGGTGCAGGTTGAGCT GGCTAGAAAGCGCAATGATGTACAAGAGGAACTAGAAAAGCTAGATGGATTATCTGCCATTGAGAAGATGCAAGCAGTCTTGATTCTCGTTGAAAACGTA TCGAAGTTGGAGTTGTTTTATCGCCAAAAAGATGATATGATAGAGCTTTTTGTGAAATGCCTTCGTCGTCAATTTTAA
AA sequence Show only first row Show all	>Lus10008312 pacid=23178491 polypeptide=Lus10008312 locus=Lus10008312.g ID=Lus10008312.BGIv1.0 annot-version=v1.0 MVESSVGGAKRGSKNLVWTPSMDNYLIDVMLEMVKNKQYQNGTFKPVTYKEMERQLNLLDPLCEVKVSPKILSRLKTLKKKFNGVKELRNLSGAGWSKSK STLSYITNTSSKPKYKRHRVVEAKTELTSVEKELLDGLKPIMEVLSSLGEALRSEIVVEQELVQVELARKRNDVQEELEKLDGLSAIEKMQAVLILVENV SKLELFYRQKDDMIELFVKCLRRQF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02210			unknown protein		Lus10008312 [exp]	0	1
					Lus10031558 [exp]	1.0	0.9145
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10019748 [exp]	1.4	0.8868
AT2G31500		CPK24	calcium-dependent protein kina...		Lus10025570 [exp]	2.0	0.8321
AT3G13310			Chaperone DnaJ-domain superfam...		Lus10032957 [exp]	2.2	0.7740
					Lus10027564 [exp]	4.2	0.7641
AT2G14378			Protein of unknown function (D...		Lus10019428 [exp]	7.5	0.6927
AT3G01570			Oleosin family protein (.1)		Lus10003742 [exp]	8.1	0.7178
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033787 [exp]	13.9	0.8494
AT3G07200			RING/U-box superfamily protein...		Lus10018271 [exp]	20.0	0.6606
					Lus10011620 [exp]	21.9	0.6326

Compare expression of checked genes

Lus10008312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.