Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035753 [exp] 238 / 2e-81 ND / Lus10028053 [exp] 236 / 2e-77 AT3G11080 120 / 8e-29 receptor like protein 35 (.1) Lus10028050 [exp] 211 / 1e-71 ND 36 / 0.004 Lus10008311 [exp] 201 / 2e-67 ND 35 / 0.008 Lus10003753 [exp] 127 / 1e-38 ND / Lus10003755 [exp] 121 / 4e-36 ND 37 / 0.002 Lus10029619 [exp] 120 / 7e-36 ND / Lus10042684 [exp] 120 / 1e-35 ND / Lus10003754 [exp] 119 / 3e-35 AT1G04520 39 / 3e-04 plasmodesmata-located protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208400 [exp] 40 / 0.0001 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008314 pacid=23178477 polypeptide=Lus10008314 locus=Lus10008314.g ID=Lus10008314.BGIv1.0 annot-version=v1.0 ATGGATTATGTGTCAAAATCGGCGATGGCCGTCATTCTGCTGGTGAGTGTTTTGAGTATGCTTATTGTTGATGCCAAACTTCCTGACAAGAGTATCATCA GCGGCCCTGATTGTTCCGGCAAATCCAACGATATGTCGTACAACAAGAAAGTGTCGCGTCTCATGGACATTTTTGTTGACGAGACAAAGAACATTCACAG GGACCACCACGTTGATTATGAGTACAAACACAACTTCCCCGATTCGGACATTGGTTCCGTCACTGGGGGTGCTACGTGTGACAGGCACCTCTGGAAGTTG GATTGTTGGTCGTGTCTCCTCACGGCAAAGAACAAAATTTACAACAACTGCGAGCGTACCCATAATGCTGAAATTAAGCTTAAAGATTGCGCCATTTGGT TCAAGAAGATCCAGTGA
AA sequence Show only first row Show all	>Lus10008314 pacid=23178477 polypeptide=Lus10008314 locus=Lus10008314.g ID=Lus10008314.BGIv1.0 annot-version=v1.0 MDYVSKSAMAVILLVSVLSMLIVDAKLPDKSIISGPDCSGKSNDMSYNKKVSRLMDIFVDETKNIHRDHHVDYEYKHNFPDSDIGSVTGGATCDRHLWKL DCWSCLLTAKNKIYNNCERTHNAEIKLKDCAIWFKKIQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008314 [exp]	0	1

Compare expression of checked genes

Lus10008314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.