Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66070 145 / 3e-42 Translation initiation factor eIF3 subunit (.1.2) AT5G37475 130 / 9e-37 Translation initiation factor eIF3 subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028057 [exp] 271 / 1e-91 AT5G37475 226 / 3e-75 Translation initiation factor eIF3 subunit (.1) Lus10028054 [exp] 65 / 1e-11 AT1G80150 437 / 8e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G138300 [exp] 151 / 8e-45 AT5G37475 200 / 8e-65 Translation initiation factor eIF3 subunit (.1) Potri.004G082200 [exp] 148 / 3e-43 AT1G66070 175 / 8e-55 Translation initiation factor eIF3 subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08597 [flax] [poplar] eIF3_subunit Translation initiation factor eIF3 subunit
Representative CDS sequence Show only first row Show all	>Lus10008317 pacid=23178485 polypeptide=Lus10008317 locus=Lus10008317.g ID=Lus10008317.BGIv1.0 annot-version=v1.0 ATGCGGATGCATTTTCTACTGTATGTCAGGCTACCAGCCAAAAATTACCTTCATGGTTTCTTTGTGGCACCAGCAATAAGTCCTATGTTGGTCCTTGTCT TACTATCTCATGGTTTCATGGCAGAGGAGGAGCACATTCCATCTCTTGTTTTGAAGGAACAACCTAAAAAAAAAGAATGGGATGATGAAGATGTGGAAGA TAATGATATTAAGGACTCGTGGGAAGATCCAGATGAAGATGAAGATAAACCGCTTGTGGTTCCTGAATCAAAACCTTCCCCAGCTCCAGAGAAGAACACC AAGAAGCCTGTAGCAAAGCCAGCGAAAGCCAAAATTGTTGAACCAGCAAAGGAAGAAGCACCACTAGATCCTGCAGCAGAGAAACTTCGCCAGCAGAGGC TTGTTGAAGAAGCTGATTACCGAAACACTCGGGAGTTATTTGGCTCAAGCAATGCTGAAAAGACCATTGATAATGTTATCCCCAAATCAGAAAGCGACTT TGAGGAATATGCAGAGCTGATTTCACAAAACCTTCGTCAACATGAGAAAAGTTACCATTTCATTCCTCTGCTGAAATCAGTAATGAGACTGTCAATGACT AGCTTAAAAGCAGCCGATGCAAAAGACGTGGCTTCAGCCATAACTGCAATTGCGAATGAAAAGCTCAAGGCAGAGAAAGAAGCCAATGCAGGCAAAAAGA AAACAGGTTGGTCTTCTGTCTCACTGCTCCTTAGTACCATGAGCGTGAAATTTCGAGCTCGAGGAATGCTGTTGATAACACAGATCTTTGATGCAGGTGG GAAAAAGAAGCAGCTGCATGTCGATAAGCCGGACGATGATATGGTGGTGAAAGGATATGATGCGCTTGATGATTATGATTTCATGTGA
AA sequence Show only first row Show all	>Lus10008317 pacid=23178485 polypeptide=Lus10008317 locus=Lus10008317.g ID=Lus10008317.BGIv1.0 annot-version=v1.0 MRMHFLLYVRLPAKNYLHGFFVAPAISPMLVLVLLSHGFMAEEEHIPSLVLKEQPKKKEWDDEDVEDNDIKDSWEDPDEDEDKPLVVPESKPSPAPEKNT KKPVAKPAKAKIVEPAKEEAPLDPAAEKLRQQRLVEEADYRNTRELFGSSNAEKTIDNVIPKSESDFEEYAELISQNLRQHEKSYHFIPLLKSVMRLSMT SLKAADAKDVASAITAIANEKLKAEKEANAGKKKTGWSSVSLLLSTMSVKFRARGMLLITQIFDAGGKKKQLHVDKPDDDMVVKGYDALDDYDFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37475			Translation initiation factor ...		Lus10008317 [exp]	0	1
AT1G03150			Acyl-CoA N-acyltransferases (N...		Lus10022048 [exp]	2.0	0.8209
AT3G60360		EDA14, UTP11	U3 SMALL NUCLEOLAR RNA-ASSOCIA...		Lus10029059 [exp]	7.2	0.7886
AT5G37475			Translation initiation factor ...		Lus10028057 [exp]	9.4	0.7527
AT3G62810			complex 1 family protein / LVR...		Lus10021599 [exp]	11.3	0.7697
AT1G11760		MED32	unknown protein		Lus10033295 [exp]	11.7	0.7759
AT2G37120			S1FA-like DNA-binding protein ...		Lus10023177 [exp]	13.4	0.7805
AT2G20450			Ribosomal protein L14 (.1)		Lus10024918 [exp]	14.3	0.7832
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10018001 [exp]	17.9	0.7739
AT5G61970			signal recognition particle-re...		Lus10043202 [exp]	20.0	0.7869
AT2G34520		RPS14	mitochondrial ribosomal protei...		Lus10017877 [exp]	21.4	0.7746

Compare expression of checked genes

Lus10008317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.