Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19510 85 / 2e-19 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT4G12010 82 / 3e-18 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 80 / 1e-17 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16990 76 / 4e-16 RLM3 RESISTANCE TO LEPTOSPHAERIA MACULANS 3, disease resistance protein (TIR-NBS class), putative AT4G19530 75 / 4e-16 disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G20142 74 / 5e-16 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT5G45060 75 / 6e-16 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G57670 74 / 1e-15 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT1G72920 72 / 1e-15 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT4G16950 73 / 3e-15 RPP5 RECOGNITION OF PERONOSPORA PARASITICA 5, Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028058 [exp] 254 / 5e-79 AT4G12010 367 / 3e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008221 [exp] 183 / 7e-54 AT4G12010 400 / 8e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10028060 [exp] 160 / 1e-45 AT4G12010 363 / 1e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008320 [exp] 158 / 4e-45 AT4G12010 402 / 1e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008222 [exp] 154 / 2e-43 AT4G12010 327 / 4e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10023051 [exp] 152 / 5e-43 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10012246 [exp] 138 / 6e-38 AT4G12010 396 / 9e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10009107 [exp] 137 / 9e-38 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008209 [exp] 125 / 3e-37 AT4G19510 107 / 8e-28 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G069866 [exp] 100 / 1e-26 AT4G12010 179 / 4e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G070436 [exp] 96 / 2e-25 AT2G20142 160 / 7e-49 Toll-Interleukin-Resistance (TIR) domain family protein (.1) Potri.019G070700 [exp] 101 / 3e-25 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 100 / 8e-25 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 100 / 8e-25 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 99 / 2e-24 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070651 [exp] 97 / 1e-23 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G098100 [exp] 89 / 2e-22 AT5G36930 159 / 1e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G096849 [exp] 89 / 3e-22 AT5G36930 167 / 4e-48 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G098600 [exp] 88 / 6e-22 AT2G20142 138 / 4e-40 Toll-Interleukin-Resistance (TIR) domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain
Representative CDS sequence Show only first row Show all	>Lus10008318 pacid=23178499 polypeptide=Lus10008318 locus=Lus10008318.g ID=Lus10008318.BGIv1.0 annot-version=v1.0 ATGGCCTCTTCATCTTCCTCTGCTCCTTCACGGCCGTACAGTGGGAAATGGGAATACGACGTTTTCCTATGTTTCAGAGGGGACACGAGGTACGATTTCA AGAGTCACCTTGAATCAGCTATGAAGGCTAAGAAAATCAGAGTCTTCGTCGACTCAATGCTAAAGAAAACGCAGGACAACGGAGAGCTGCTCGGAATCCT CGAAAGGACTGCGGTTTCGGTGGTGATTTTTTCGGGCAAGTTCGCTGGTTCGCCCTGGTGCTTGGACGAGGTTTGCACCATCGTTGAGAGCATTGGGAAA TATGGACACAGCGCACTTCCGGTATTTCACAAAGTGGATTGGATGACTGTTGCTGGCGACTACCATTGCTCCGATTGTTTGAAGTCGGCGATCTGCTGCT CTTGCTTTCTCGATCGCCAGCCACTGATCAAAGTAACAAGTAAAATTGAAACTGGATCTCATGTGTCGATTTTGTCATCACTAGTAAATCGTGGTAAGAA ATTAGGTGTGAAGGCACAGATCTGTCTATAG
AA sequence Show only first row Show all	>Lus10008318 pacid=23178499 polypeptide=Lus10008318 locus=Lus10008318.g ID=Lus10008318.BGIv1.0 annot-version=v1.0 MASSSSSAPSRPYSGKWEYDVFLCFRGDTRYDFKSHLESAMKAKKIRVFVDSMLKKTQDNGELLGILERTAVSVVIFSGKFAGSPWCLDEVCTIVESIGK YGHSALPVFHKVDWMTVAGDYHCSDCLKSAICCSCFLDRQPLIKVTSKIETGSHVSILSSLVNRGKKLGVKAQICL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19510			Disease resistance protein (TI...		Lus10008318 [exp]	0	1
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Lus10006214 [exp]	11.1	0.8470
AT3G44970			Cytochrome P450 superfamily pr...		Lus10013060 [exp]	13.7	0.8226
AT1G61720		BAN	BANYULS, NAD(P)-binding Rossma...		Lus10020072 [exp]	16.1	0.6007
					Lus10012079 [exp]	16.1	0.8254
					Lus10019151 [exp]	17.0	0.8189
AT2G23440			unknown protein		Lus10009345 [exp]	17.7	0.7493
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10039087 [exp]	19.7	0.8250
AT1G13680			PLC-like phosphodiesterases su...		Lus10000649 [exp]	22.4	0.8146
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10023446 [exp]	25.7	0.8200
AT2G23945			Eukaryotic aspartyl protease f...		Lus10031113 [exp]	26.4	0.8080

Compare expression of checked genes

Lus10008318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.