Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27180 53 / 1e-07 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G13230 47 / 1e-05 Leucine-rich repeat (LRR) family protein (.1) AT5G17680 45 / 4e-05 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G53890 41 / 0.0007 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT3G12145 41 / 0.0007 FLOR1, FLR1 FLOR1, Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028058 [exp] 345 / 9e-111 AT4G12010 367 / 3e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10028060 [exp] 157 / 4e-43 AT4G12010 363 / 1e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008221 [exp] 154 / 3e-42 AT4G12010 400 / 8e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008320 [exp] 152 / 3e-41 AT4G12010 402 / 1e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10023051 [exp] 114 / 2e-28 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10011580 [exp] 96 / 9e-22 AT5G64500 625 / 0.0 Major facilitator superfamily protein (.1) Lus10024150 [exp] 94 / 2e-21 AT1G69550 186 / 9e-49 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10010223 [exp] 92 / 1e-20 AT5G17680 218 / 6e-58 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10018021 [exp] 89 / 2e-19 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G030318 [exp] 47 / 1e-05 AT1G69550 673 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.019G070479 [exp] 45 / 6e-05 AT5G17680 285 / 2e-80 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 44 / 0.0001 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 44 / 0.0001 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.005G031101 [exp] 43 / 0.0002 AT5G17680 557 / 8e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.004G170300 [exp] 43 / 0.0002 AT3G14470 401 / 3e-123 NB-ARC domain-containing disease resistance protein (.1) Potri.002G129300 [exp] 43 / 0.0002 AT4G33300 902 / 0.0 ADR1-like 1 (.1.2) Potri.017G103701 [exp] 43 / 0.0002 AT5G17680 544 / 5e-170 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.014G005600 [exp] 43 / 0.0002 AT3G14470 362 / 3e-107 NB-ARC domain-containing disease resistance protein (.1) Potri.017G103101 [exp] 42 / 0.0003 AT4G12010 236 / 1e-64 Disease resistance protein (TIR-NBS-LRR class) family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008319 pacid=23178487 polypeptide=Lus10008319 locus=Lus10008319.g ID=Lus10008319.BGIv1.0 annot-version=v1.0 ATGAGGTATGCCAAACTCACAACACTGCCGGCTGAGATATGGGATATGGTCTCTGACGAACTCATTGTCGAGGATTCCCCGCTGATCGGCTCCTTTCCGG TGATTTCTAAGCCTGAATCGCACTCTTTGACCATGCTTCGAGTTAATGGCTGCGGATTGGTTACAGAGTTTCCGTCTTGCATATGCAAGCTGAAGCTGTT GGAAGTTCTGGTTTTCGTTGGGACCGGTATTAGGTCGGTTCCTTCGTGTATACGAGAATTGGAGCAGCTGTCTTACTTGGATCTTTCGTACAATGCGAGC TTGGAGTTGATACCTAGCACGATCAATGAGCTCGCCAAGCTGTCTAAGCCGAAACTAGTGGAAGCGAAATTCGCAAGGATTGAAGCTGGATCATCTCCCG CGGCTGATTGGAAACTCCCATGTCCTTGCCAAACTGCCACATCGAGGCTCGTCTCGCCCCTCCAAGAGGCGCGAACTTGTTTGAACTGTGTATGGTCGAT GCAGGTTGAGGTTGGTATTCACAGTTCAGGTAGTGATCAGAGTGTGAGAATGCAGCTTTGGGATGGGAAGTCTAGGAAGAGACCACTAAACTTGGCTGAA GATACTACGGGTGTGAAAAGGCAGTTACGCTACGACGATGATAGTGGGGAATTTTCGAGCCATAAAATTGGAGGGAGTCTATCTCGAGGTCGTGCGTTCA CTATACCAACCAGGCGGTTCAATGCATATCGTAGGGTGTCAAAAAGAAGTAGAGCTTCGAAAGTTGATGCACAAGAAGATGCACACACAAATAATGATAC TGAAAAAAATTTTAATGGGGTCGTTATTCCTTAG
AA sequence Show only first row Show all	>Lus10008319 pacid=23178487 polypeptide=Lus10008319 locus=Lus10008319.g ID=Lus10008319.BGIv1.0 annot-version=v1.0 MRYAKLTTLPAEIWDMVSDELIVEDSPLIGSFPVISKPESHSLTMLRVNGCGLVTEFPSCICKLKLLEVLVFVGTGIRSVPSCIRELEQLSYLDLSYNAS LELIPSTINELAKLSKPKLVEAKFARIEAGSSPAADWKLPCPCQTATSRLVSPLQEARTCLNCVWSMQVEVGIHSSGSDQSVRMQLWDGKSRKRPLNLAE DTTGVKRQLRYDDDSGEFSSHKIGGSLSRGRAFTIPTRRFNAYRRVSKRSRASKVDAQEDAHTNNDTEKNFNGVVIP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27170			transmembrane receptors;ATP bi...		Lus10008319 [exp]	0	1
AT4G36210			Protein of unknown function (D...		Lus10033181 [exp]	1.0	0.8698
AT3G52490			Double Clp-N motif-containing ...		Lus10024536 [exp]	8.0	0.8281
					Lus10006529 [exp]	9.8	0.8281
AT2G06090			Plant self-incompatibility pro...		Lus10011896 [exp]	11.3	0.8281
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10015614 [exp]	12.6	0.8281
					Lus10035557 [exp]	13.9	0.8281
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10003704 [exp]	14.4	0.8058
AT5G53910			RING/U-box superfamily protein...		Lus10011380 [exp]	15.0	0.8281
					Lus10005297 [exp]	16.0	0.8281
					Lus10013260 [exp]	17.0	0.8281

Compare expression of checked genes

Lus10008319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.