Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42020 40 / 4e-05 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 39 / 0.0001 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT1G09080 39 / 0.0002 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028061 [exp] 51 / 7e-09 AT5G28540 664 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10015483 [exp] 50 / 2e-08 AT5G28540 758 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10023016 [exp] 45 / 1e-06 AT5G28540 246 / 9e-77 heat shock protein 70 (Hsp 70) family protein (.1) Lus10019915 [exp] 42 / 1e-05 AT5G28540 321 / 2e-101 heat shock protein 70 (Hsp 70) family protein (.1) Lus10013882 [exp] 42 / 2e-05 AT5G28540 188 / 2e-55 heat shock protein 70 (Hsp 70) family protein (.1) Lus10026349 [exp] 40 / 2e-05 AT5G42020 55 / 1e-10 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10023043 [exp] 41 / 4e-05 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10032430 [exp] 39 / 0.0001 AT5G42020 1033 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10020977 [exp] 39 / 0.0001 AT5G28540 779 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G143600 [exp] 42 / 2e-05 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G087500 [exp] 40 / 8e-05 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.013G018000 [exp] 39 / 0.0002 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.008G054700 [exp] 37 / 0.0007 AT5G02500 920 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.001G042600 [exp] 37 / 0.0007 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.012G017600 [exp] 37 / 0.0009 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10008321 pacid=23178493 polypeptide=Lus10008321 locus=Lus10008321.g ID=Lus10008321.BGIv1.0 annot-version=v1.0 ATGGTAAAAGAGGCTAAGAAGACATCGGCAAAGGAAGACAGAAGGGAGAAGACTCGAATCGAGGCTCGAAACAGCTTGGAGGAATTCATTTCCAGTTCGT TTGGTGCCCTATGCGGTTTCTATTCCGATCCTTCGAGGATCAGTTGGAAGAAAAGCTTAAGAGCAGCTTCTGAATGGCTGAAGAAGAACAAGAATGCTTC CAAGGAAGAGTTCGAGATCAAGCAGCAGATGCTTATCGAAGCACGTCATCACAGTTGTTACAACCACCACGACTAG
AA sequence Show only first row Show all	>Lus10008321 pacid=23178493 polypeptide=Lus10008321 locus=Lus10008321.g ID=Lus10008321.BGIv1.0 annot-version=v1.0 MVKEAKKTSAKEDRREKTRIEARNSLEEFISSSFGALCGFYSDPSRISWKKSLRAASEWLKKNKNASKEEFEIKQQMLIEARHHSCYNHHD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008321 [exp]	0	1
AT1G62935			unknown protein		Lus10009297 [exp]	2.8	0.9046
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033581 [exp]	6.0	0.8956
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10028473 [exp]	6.3	0.8683
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10013116 [exp]	7.3	0.7958
AT1G70850		MLP34	MLP-like protein 34 (.1.2.3)		Lus10002644 [exp]	8.2	0.8838
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011986 [exp]	8.7	0.8889
AT1G20870			HSP20-like chaperones superfam...		Lus10007642 [exp]	14.5	0.8828
					Lus10002237 [exp]	15.1	0.8518
AT1G68630			PLAC8 family protein (.1)		Lus10009036 [exp]	16.4	0.8573
AT4G13990			Exostosin family protein (.1)		Lus10005492 [exp]	16.9	0.8687

Compare expression of checked genes

Lus10008321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.