Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28540 89 / 1e-21 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 89 / 2e-21 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT3G12580 76 / 4e-17 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT5G02490 76 / 5e-17 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT5G02500 76 / 7e-17 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT1G56410 76 / 9e-17 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT3G09440 76 / 9e-17 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G16030 75 / 1e-16 HSP70B heat shock protein 70B (.1) AT1G09080 70 / 8e-15 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT4G37910 63 / 2e-12 MTHSC70-1 mitochondrial heat shock protein 70-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028061 [exp] 141 / 3e-40 AT5G28540 664 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10013882 [exp] 111 / 6e-31 AT5G28540 188 / 2e-55 heat shock protein 70 (Hsp 70) family protein (.1) Lus10007778 [exp] 104 / 5e-28 AT5G42020 318 / 5e-104 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10020977 [exp] 107 / 9e-28 AT5G28540 779 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10029103 [exp] 105 / 2e-27 AT5G28540 615 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10022375 [exp] 104 / 8e-27 AT5G28540 767 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10015483 [exp] 101 / 9e-26 AT5G28540 758 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10023016 [exp] 92 / 2e-23 AT5G28540 246 / 9e-77 heat shock protein 70 (Hsp 70) family protein (.1) Lus10023043 [exp] 87 / 1e-20 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G018000 [exp] 92 / 1e-22 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.012G017600 [exp] 90 / 8e-22 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.003G143600 [exp] 86 / 2e-20 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G087500 [exp] 86 / 2e-20 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.008G054000 [exp] 77 / 2e-17 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054600 [exp] 76 / 5e-17 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G206600 [exp] 76 / 8e-17 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054700 [exp] 76 / 8e-17 AT5G02500 920 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205700 [exp] 76 / 8e-17 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.001G042600 [exp] 75 / 1e-16 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10008323 pacid=23178472 polypeptide=Lus10008323 locus=Lus10008323.g ID=Lus10008323.BGIv1.0 annot-version=v1.0 ATGAATTTGCAGATATATCAAGGTGAAAGAAGTTTGCAAAATTTCATTTTACAAGGCCTTCAGCCGGCTCCAAGAGGAGTTTGTAAAATGAACGTGACGT TCGAGATCAATGAAGACGAAATTTTAAGCATAATTGCGAAAGAAGTAACGGAAGGAAAAAATTCAAAATCCCTAACAATCAAGAGCTTCACCGGGAATTT AACTGCGGAGCAAGTGGGGAGGATGATAAAAGAGGCCAAAAAGATGTCGGAGGACGACAAAAAGGAGAAGGCTCGAATTATGGCTCGGAACAGATTGAGA GGATACATTTTGGATTTGAAGGAGTTGGCCGATGCTGTTTTTAACTTTGACTCTCTGCTGTTTGAACTTTTCTTTTTCATCAGTTCAATTTTCTAA
AA sequence Show only first row Show all	>Lus10008323 pacid=23178472 polypeptide=Lus10008323 locus=Lus10008323.g ID=Lus10008323.BGIv1.0 annot-version=v1.0 MNLQIYQGERSLQNFILQGLQPAPRGVCKMNVTFEINEDEILSIIAKEVTEGKNSKSLTIKSFTGNLTAEQVGRMIKEAKKMSEDDKKEKARIMARNRLR GYILDLKELADAVFNFDSLLFELFFFISSIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10008323 [exp]	0	1

Compare expression of checked genes

Lus10008323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.