Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21920 377 / 8e-128 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G77660 368 / 4e-124 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT4G17080 273 / 5e-86 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT2G35170 260 / 2e-81 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G77740 94 / 3e-20 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT1G21980 93 / 8e-20 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT2G41210 91 / 4e-19 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT3G56960 87 / 4e-18 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT2G26420 86 / 9e-18 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT1G60890 85 / 3e-17 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028062 [exp] 656 / 0 AT1G77660 442 / 2e-153 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10028158 [exp] 278 / 2e-87 AT4G17080 508 / 1e-176 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10042858 [exp] 240 / 2e-73 AT4G17080 439 / 3e-150 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10018200 [exp] 99 / 8e-22 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10025636 [exp] 99 / 9e-22 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10029661 [exp] 96 / 1e-20 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10008651 [exp] 95 / 3e-20 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10002734 [exp] 91 / 5e-19 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10039507 [exp] 87 / 1e-17 AT3G07960 942 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G175800 [exp] 486 / 2e-170 AT1G21920 372 / 3e-126 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.002G085900 [exp] 477 / 1e-166 AT1G21920 396 / 7e-136 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.002G140000 [exp] 276 / 8e-88 AT4G17080 373 / 1e-124 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.003G085000 [exp] 276 / 9e-87 AT4G17080 417 / 5e-141 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.001G149400 [exp] 275 / 2e-86 AT4G17080 395 / 2e-132 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.014G052300 [exp] 269 / 5e-85 AT4G17080 348 / 2e-115 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.002G088100 [exp] 93 / 6e-20 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.016G036800 [exp] 91 / 4e-19 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.005G172800 [exp] 89 / 1e-18 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 89 / 1e-18 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10008325 pacid=23178454 polypeptide=Lus10008325 locus=Lus10008325.g ID=Lus10008325.BGIv1.0 annot-version=v1.0 ATGGGAAGCCAGGGGAAGCTCACGAGGAGTGCGTCTTCGTTTCTGCGGTCGTCGCCAACGGTTCGATCGTCAATCCACAGTCTACACAGCTTATCTTCGA TGGCGGAGGAGGACCTGACCACTCCTCTGAGACCGCCAGCGTCGGAGGAGGAAGACGATAAGGAGAAAGGGAAAGAAGATCGGAGGAGGCGGCCACACCG GTGCGGGTCGAGCTCGACTCCACGGAGGACCGGGTCGACCCGGTTCACACCTGTTTTAACAATGGTTTCGATCGCTTTCTTCTCGTTCTTCTCGCTCTCG TTTTTCCTCTTCTTCTATCTGAGAAGGGACGAGATACCTACATCGGAGAATCTGCTGCTAGGTCTGATTTTCATCGCCATAACCCTATTATTCGCCAGCA AGAACAAGAGCCTAATCAACCAGAATCTCTACCTGATCAAGCAGCTCTGGGACGAGAACGGGAGGAGATTCTGCGTGTTCGCTTCGAGGAGTGCCAAGAG CAGCAACAAGCAGGTAAAATGGTTCATCGGCGAGTCAGATTCGTCAATCTCCGTCAAGATTCGGAACGAGGACAAAGTAATCAGGGAAGGAGTCGAGTTC TACAGCAATGGCGATTACTACGAGGGCGAATTCCACAAGGGCAAGTGCAATGGCTCTGGGGTTTACAACTTCTTCGTCAATGGCAGATACGAAGGCGAGT GGAGCCACGGGAGGTACGACGGGTACGGGATCGAGAGCTGGGCTAGAGGGAGCAGGTACAGAGGGCAGTACAGACAAGGTCTGAGGCATGGCCATGGAGT ATACAGGTTCTTCACTGGTGATTCTTACGCCGGAGAGTGGTATAACGGGCAGAGCCATGGATTTGGAGTTCAGACATGCGCAGATGGTAGTTGCTATGTT GGTGAATTCAAGTGTGGTGTTAAGCATGGCCTTGGAGTCTATCATTTCAGAAATGGAGATCGATATGGTGGAGAGTACTTTGGAGACAAGATCCACGGAT TCGGTGTTTACCATTTTGCGAATGGCCATTGCTACGAAGGGTCGTGGCACGAAGGGAGGAAGCAAGGTTACGGGATGTACATTTTCCGGAATGGCGATAC GAGATGCGGGGAATGGGATGGTGGAATCATTAAGATTCCCTTATCACCACAAACCGAAGGAGTTCTCCGAGCAGTGCAGTCTGCAAGGAAGACTGCTGCG AATGCGGTCAAAGTTCGTCGAGTAGACGAACAAGTGAACCGGTCAGTTCAGGCAGCGAACCGGGCCGCCACAGCTGCCAGAGTGGCTGGTGTTGAGACTG GTTCGCAACGAACAGAGAAGCTGTTCAGAACAGAATGGATGGCAAATTTTGTGACACTAATGTTTAGTAAGGATGAAGGAGTGTTGTTGTTTAGAAGAAG AAGAAGAAAATTGTAA
AA sequence Show only first row Show all	>Lus10008325 pacid=23178454 polypeptide=Lus10008325 locus=Lus10008325.g ID=Lus10008325.BGIv1.0 annot-version=v1.0 MGSQGKLTRSASSFLRSSPTVRSSIHSLHSLSSMAEEDLTTPLRPPASEEEDDKEKGKEDRRRRPHRCGSSSTPRRTGSTRFTPVLTMVSIAFFSFFSLS FFLFFYLRRDEIPTSENLLLGLIFIAITLLFASKNKSLINQNLYLIKQLWDENGRRFCVFASRSAKSSNKQVKWFIGESDSSISVKIRNEDKVIREGVEF YSNGDYYEGEFHKGKCNGSGVYNFFVNGRYEGEWSHGRYDGYGIESWARGSRYRGQYRQGLRHGHGVYRFFTGDSYAGEWYNGQSHGFGVQTCADGSCYV GEFKCGVKHGLGVYHFRNGDRYGGEYFGDKIHGFGVYHFANGHCYEGSWHEGRKQGYGMYIFRNGDTRCGEWDGGIIKIPLSPQTEGVLRAVQSARKTAA NAVKVRRVDEQVNRSVQAANRAATAARVAGVETGSQRTEKLFRTEWMANFVTLMFSKDEGVLLFRRRRRKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77660			Histone H3 K4-specific methylt...		Lus10008325 [exp]	0	1
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10010907 [exp]	1.7	0.9200
AT2G01690			ARM repeat superfamily protein...		Lus10034578 [exp]	2.4	0.9445
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10022458 [exp]	4.5	0.9186
AT3G47160			RING/U-box superfamily protein...		Lus10037053 [exp]	4.9	0.9252
AT2G42790		CSY3	citrate synthase 3 (.1)		Lus10010945 [exp]	5.2	0.9093
AT5G05140			Transcription elongation facto...		Lus10027295 [exp]	6.3	0.9198
AT1G27700			Syntaxin/t-SNARE family protei...		Lus10007766 [exp]	7.9	0.8908
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10033969 [exp]	12.0	0.8971
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10042348 [exp]	13.0	0.8882
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10018324 [exp]	13.6	0.8870

Compare expression of checked genes

Lus10008325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.