Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013551 [exp] 209 / 1e-61 AT5G28540 506 / 6e-159 heat shock protein 70 (Hsp 70) family protein (.1) Lus10007254 [exp] 186 / 2e-54 AT1G14340 244 / 2e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10025569 [exp] 167 / 2e-49 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10017290 [exp] 157 / 1e-46 ND / Lus10013548 [exp] 154 / 5e-45 AT5G06600 55 / 3e-08 ubiquitin-specific protease 12 (.1.2.3) Lus10017291 [exp] 149 / 1e-42 AT5G06600 100 / 3e-22 ubiquitin-specific protease 12 (.1.2.3) Lus10019772 [exp] 150 / 2e-41 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10027235 [exp] 117 / 2e-32 ND / Lus10027076 [exp] 114 / 6e-32 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008326 pacid=23178474 polypeptide=Lus10008326 locus=Lus10008326.g ID=Lus10008326.BGIv1.0 annot-version=v1.0 ATGACCTACTGTCCTGACTCATTATCAAGTTTGCAATGCGCTACAAGAAACATCATAGATGAGCTTTCATCGTTCACTATTGGCTCGAATTCTACTTCCG GGAGTTTACTTACACAACAAGAAAGAGAAAAACTGTTCCAGTTCCTCGACATGTCACTAGAAGCCATATCTCAAGCCAACGCATTTGATGACGTCGAGAA ACTCATCCTGAAGATTGCTGAGCAGGAAACCGATCCGATCAAGAAGACATCCCTGAGCAAGGTACTCACTCGCATAACAGAGTTCAAGGACAGCATTCCC AACTATCTCACAGTTATCGAGACATCCAACGATGTCGAGTCGTCCAGAGCGCATGATGTTCATGAATTGGAAGCAAAACTGGTGGAGAAGCAAAACCAGA TATGCCTGATGGAGTCTGAAGTTTGCAGAATGTGGGAAGAGGAGACGAAGCTGGAATCCGAAATTAAGCTCATGATTGCCCGTAGAGATAAAATGGCCGA GGAAAGGAAGTCGAGGACGAATGAACTGATGGACACCAACCGAGAGGCTTCGAGGGAGTTGGAAGAAGTGAAGAAACAGGTGGCGGAGCGCGACCAAGCT AGAGATAATAAGTTGACTGCCAAGGAGAAGATAGCTCAATCCAATGCAAGTTGGAAGTTTCTCAAGGAGTATTTGCTCGAAGTTAATCCTGACAAGTCTG CAGAATCTACAGCCTCATCAAACCAATAG
AA sequence Show only first row Show all	>Lus10008326 pacid=23178474 polypeptide=Lus10008326 locus=Lus10008326.g ID=Lus10008326.BGIv1.0 annot-version=v1.0 MTYCPDSLSSLQCATRNIIDELSSFTIGSNSTSGSLLTQQEREKLFQFLDMSLEAISQANAFDDVEKLILKIAEQETDPIKKTSLSKVLTRITEFKDSIP NYLTVIETSNDVESSRAHDVHELEAKLVEKQNQICLMESEVCRMWEEETKLESEIKLMIARRDKMAEERKSRTNELMDTNREASRELEEVKKQVAERDQA RDNKLTAKEKIAQSNASWKFLKEYLLEVNPDKSAESTASSNQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008326 [exp]	0	1
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10012842 [exp]	10.5	0.9917
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10007280 [exp]	10.7	0.9911
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032263 [exp]	10.9	0.9953
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10017279 [exp]	11.2	0.9889
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10028893 [exp]	11.5	0.9863
AT5G14570		ATNRT2.7	high affinity nitrate transpor...		Lus10008767 [exp]	12.0	0.9814
					Lus10014857 [exp]	15.6	0.9947
AT1G26945	bHLH	KDR, PRE6	KIDARI, basic helix-loop-helix...		Lus10036732 [exp]	17.3	0.9798
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10003309 [exp]	18.6	0.9663
AT2G19110		ATHMA4, HMA4	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10006956 [exp]	19.1	0.9947

Compare expression of checked genes

Lus10008326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.