Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31820 807 / 0 Ankyrin repeat family protein (.1) AT1G05640 759 / 0 Ankyrin repeat family protein (.1) AT1G07710 510 / 9e-176 Ankyrin repeat family protein (.1) AT5G60070 507 / 1e-174 ankyrin repeat family protein (.1) AT5G02620 436 / 4e-147 ATANK1, ANK1 ankyrin-like1 (.1) AT3G12360 343 / 2e-110 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT2G01680 340 / 1e-109 Ankyrin repeat family protein (.1) AT3G09550 328 / 4e-104 Ankyrin repeat family protein (.1) AT5G54710 122 / 3e-29 Ankyrin repeat family protein (.1) AT1G34050 109 / 5e-25 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027074 [exp] 770 / 0 AT2G31820 626 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 548 / 0 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 545 / 0 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10024440 [exp] 460 / 5e-156 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10025289 [exp] 442 / 1e-149 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10027075 [exp] 363 / 2e-123 AT2G31820 209 / 5e-64 Ankyrin repeat family protein (.1) Lus10003308 [exp] 354 / 2e-114 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10023460 [exp] 348 / 2e-112 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10034579 [exp] 346 / 6e-112 AT2G01680 768 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G006800 [exp] 844 / 0 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 806 / 0 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 528 / 0 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 514 / 1e-177 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 498 / 4e-171 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 494 / 2e-169 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069400 [exp] 488 / 2e-167 AT1G07710 676 / 0.0 Ankyrin repeat family protein (.1) Potri.010G106800 [exp] 367 / 2e-120 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1) Potri.008G134500 [exp] 356 / 6e-116 AT2G01680 750 / 0.0 Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 351 / 2e-113 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008329 pacid=23178462 polypeptide=Lus10008329 locus=Lus10008329.g ID=Lus10008329.BGIv1.0 annot-version=v1.0 ATGGCGATTGTTGGAGATGTGATCATGGAGAACCAAACAAGTTCCAAGGAGGAGGAGCCTACTACAACAATGGAGAAACCCAAAAAGAAATTGGTGAAAC ACCTGAGTTTCCAAGGCGTGACAGTTGTAGGGGGAAATGACGAAAATCGAAGAGCGGTGATGGATAGACACCCCAGTTTCAGAGGAGCGATGGAGAAGCA GAAGAGTTTCCGTGGCTTTGTTGAGAAGCAGAAGAGCTTCCGTGCTGTGATGGAGAGGCAGCTGAGCTTTATCGGTGTCAGCGAGAGGAAGAAAAACAGC AAAGAGTCGTCTCCTGGGAAACGGGGAGATTCGCCGCTTCATTTGGCTGCTCGAGCTGCGAATTTGAGTAAGGTTAGGGAGATTCTTCAGAAATGTGGTG ATGCGAGAAGTGAAGCAAAGGGTTTGCTGTCGGTTCAGAATCAAGAAGGAGAGACTCCTCTATATGCAGCGGCGGAATGCGGGCTGGCTGATGTGGTTTC TGAGATGTTGGGATATATGGATTTGGATACAGCTTCCATTGCTGCTAGGAATGGGTTTGATCCTTTCCATGTTGCAGCAAAGCAAGGTCATTTAGAAGTA CTGAGGGAACTTCTAGATGTTTTCCCCAACCTGGCCATGACCACTGACTTGTCATGCACGACTGCCTTGCACACGGCCGCCTCTCAAGGGCACATAGATG TGGTCAACCTCCTTTTGGAGACAGATTCGAATCTTGCAAAGATTGCACGGAATAACGGGAAAACAGTTCTTCATTCAGCTGCAAGAATGGGGCACTTGGA GGTTGTGCATTCCCTACTGATCAACGATCCAAGTTCCGGTTTCAGGACGGATAAGAAGGGACAGACTGCACTCCATATGGCTGTCAAAGGTCAAAATGTC GAAATCGTGATGGAATTGCTGAAGCCTGATCCTTCCGTTGCGAGTTTAGAAGATAGTAAAGGGAACACCGCGTTGCATATTGCCACGGCAAAGTTGCGTA CCCAGAACGTGCGATGTCTATTGTCCATTGAGGGCGTTAATGTCAATTCTATGAACAAGAGAGGGGAGACACCATTGGATTTGGCAGAGAAACTATCAAA CCTTGAACTTGTTACTGTTCTGAAGGAGGCAGGGGCTAACAACTCGAAAGATCTCGTTAAGCCTTCAAACCCGGCTAAGCAACTTAAGCAGACTGTCAGC GACATAAAACATGATGTCCAATCCCAGCTCAAACAGACGCGACAAACCGGATTCAGGGTACAGAAAATCGCCAAGCGGCTGAAAAAGCTCCATATAAGCG GCCTAAACAACGCTATAAACTCGGCGACAGTTGTCGCTGTGCTCATTGCCACTGTTGCATTCGCAGCTATTTTCACAGTTCCCGGCCAGTACGTCGAGCA GAAAGTGCCCGGAGTGTCTCTCGGGCAAGCCCATATAGCAGACAACCCGGCTTTCCTGATATTTTTCGTGTTTGATAGCTTGGCATTGTTCATCTCTCTC GCTGTTGTTGTAGTGCAAACATCGGTTGTCGTGATCGAACAAAAGGCCAAACAGCAGCTTGTCTTTGTCATCAACAAACTTATGTGGCTCGCTTGTCTCT CCGTCTCAGTTTCCTTCATCTCCCTCAGTTACATTGTCGTCGGGAAGAGATCCCGGTGGCTTGCTATCTACACAACGAGTGTCGGTTCGGTGATCATGCT CACAACTATCGGATCCATGTGCTATTGTGTAGTGGTGCATAGGATGGAGGAATCTAAGCTGAGGAGCATAAGGAAAACCGAGAGCAGGTCTCACTCTTAT CCGAGGTCTCAGGCTTCCGATCAGGAGATTTTGGAGGGCGAATATAAGAGGATGTATGCACTGTAG
AA sequence Show only first row Show all	>Lus10008329 pacid=23178462 polypeptide=Lus10008329 locus=Lus10008329.g ID=Lus10008329.BGIv1.0 annot-version=v1.0 MAIVGDVIMENQTSSKEEEPTTTMEKPKKKLVKHLSFQGVTVVGGNDENRRAVMDRHPSFRGAMEKQKSFRGFVEKQKSFRAVMERQLSFIGVSERKKNS KESSPGKRGDSPLHLAARAANLSKVREILQKCGDARSEAKGLLSVQNQEGETPLYAAAECGLADVVSEMLGYMDLDTASIAARNGFDPFHVAAKQGHLEV LRELLDVFPNLAMTTDLSCTTALHTAASQGHIDVVNLLLETDSNLAKIARNNGKTVLHSAARMGHLEVVHSLLINDPSSGFRTDKKGQTALHMAVKGQNV EIVMELLKPDPSVASLEDSKGNTALHIATAKLRTQNVRCLLSIEGVNVNSMNKRGETPLDLAEKLSNLELVTVLKEAGANNSKDLVKPSNPAKQLKQTVS DIKHDVQSQLKQTRQTGFRVQKIAKRLKKLHISGLNNAINSATVVAVLIATVAFAAIFTVPGQYVEQKVPGVSLGQAHIADNPAFLIFFVFDSLALFISL AVVVVQTSVVVIEQKAKQQLVFVINKLMWLACLSVSVSFISLSYIVVGKRSRWLAIYTTSVGSVIMLTTIGSMCYCVVVHRMEESKLRSIRKTESRSHSY PRSQASDQEILEGEYKRMYAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31820			Ankyrin repeat family protein ...		Lus10008329 [exp]	0	1
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Lus10028118 [exp]	2.2	0.6944
AT4G33940			RING/U-box superfamily protein...		Lus10027921 [exp]	3.7	0.6932
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10009435 [exp]	3.9	0.7153
AT1G80630			RNI-like superfamily protein (...		Lus10041648 [exp]	6.0	0.7087
AT4G11680			Zinc finger, C3HC4 type (RING ...		Lus10006313 [exp]	17.8	0.7138
AT5G02420			unknown protein		Lus10038653 [exp]	20.4	0.6798
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10021304 [exp]	21.3	0.6948
AT1G68070			Zinc finger, C3HC4 type (RING ...		Lus10034587 [exp]	21.4	0.6931
AT3G12400		ELC, ATELC	Ubiquitin-conjugating enzyme/R...		Lus10008690 [exp]	24.4	0.6628
AT3G45940			Glycosyl hydrolases family 31 ...		Lus10031003 [exp]	26.0	0.6450

Compare expression of checked genes

Lus10008329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.