Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43900 1359 / 0 Endonuclease/exonuclease/phosphatase family protein (.1) AT1G65580 1078 / 0 FRA3 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) AT1G05630 958 / 0 AT5PTASE13, 5PTASE13 Endonuclease/exonuclease/phosphatase family protein (.1.2) AT2G31830 877 / 0 endonuclease/exonuclease/phosphatase family protein (.1.2) AT4G18010 120 / 8e-28 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT1G71710 120 / 9e-28 DNAse I-like superfamily protein (.1.2) AT2G37440 114 / 3e-26 DNAse I-like superfamily protein (.1.2) AT2G01900 112 / 5e-26 DNAse I-like superfamily protein (.1) AT3G63240 109 / 2e-24 DNAse I-like superfamily protein (.1) AT5G65090 105 / 2e-23 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027073 [exp] 1977 / 0 AT2G43900 1455 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Lus10041607 [exp] 1051 / 0 AT1G65580 1398 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Lus10024112 [exp] 574 / 0 AT1G65580 733 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Lus10024113 [exp] 291 / 2e-85 AT1G65580 672 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Lus10011041 [exp] 122 / 2e-28 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10003010 [exp] 119 / 2e-27 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10028697 [exp] 114 / 1e-25 AT1G71710 675 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10006597 [exp] 107 / 3e-24 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10028727 [exp] 109 / 4e-24 AT1G71710 674 / 0.0 DNAse I-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G145100 [exp] 1020 / 0 AT2G43900 1511 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Potri.017G006900 [exp] 1019 / 0 AT1G05630 1508 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1.2) Potri.008G079300 [exp] 917 / 0 AT1G65580 1475 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Potri.010G177400 [exp] 899 / 0 AT1G65580 1490 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Potri.001G145900 [exp] 123 / 1e-28 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.015G032200 [exp] 120 / 2e-28 AT2G01900 476 / 1e-166 DNAse I-like superfamily protein (.1) Potri.012G041600 [exp] 119 / 6e-28 AT2G01900 472 / 3e-165 DNAse I-like superfamily protein (.1) Potri.003G088300 [exp] 117 / 1e-26 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.010G101700 [exp] 115 / 1e-26 AT2G01900 537 / 0.0 DNAse I-like superfamily protein (.1) Potri.017G074200 [exp] 111 / 2e-25 AT2G37440 328 / 8e-108 DNAse I-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10008330 pacid=23178469 polypeptide=Lus10008330 locus=Lus10008330.g ID=Lus10008330.BGIv1.0 annot-version=v1.0 ATGGACGCTGGGGACAACAAAATCGAAGAAGAAGACAAACAGGCGCTGGCCGGACTGAGCTCCGTCCCCCAACAGCACCGCGCCAAAGTCCATTCCTACA GCCAACAGCTCCGCGGCGGCGAGAAGCGGCACCGCCAGGTGCGAAAGCACAGCCTCGACGACATCCCCTCCGGCGGCCGACATTTCTCCAACTCCGCCTC TGATGACGATTTCGCCAATTACTCTCTCAATCTGGACGAAGACTCCGACGGATCCCTAGATCTGAAGCCCTACAATCCGCTCACTGAATTCGTCGCCTCC GCAACCCCGACCGGATCCGGATCTGTATCCGGTGGCAGTACAGGCGGAAGCACTGGCGGCAGCAGTCAAGGCTCCGGCGAAGGAGGGAGTAATTCGGCCG TAGCCGCCTCCGGCGGCAGCGGAAGCGGGATTTTCAAAGTACCGACGAGGGCGGCGGTGCATCCAGGGAGGCCGCCGTGCTTGGAGCTGAGGCCGCATCC ATTGAGGGAGACGCAAGTGGGGAAGTTTCTGAGGAACATAGCGTGTACGGAGACGCAGCTGTGGGCGGGTCAGGAGTGCGGGATCCGGTTCTGGAAGTTT GACCGAATCTACGAAGCTGGGGGTGGGTTGGGCGGGAAGGTGAGGAGAGGAGATGAGGATGCGGCGCCGTTTCAGGAGTCGGTGAATATTTCCCCGACGT TTTGCTTGATGGCGGACGCCGCGAACGGGTTGGTGTGGAGCGGGCACAAGGATGGTAAGATCCGGTCGTGGAAAACGGAGCAGAAAATTGATCACGAAGA AGGTGAAGATGCTGCTGCTGCTGCCGCTACGTCTCCTCAGCCTTTTAAGGAAGGGCTTTCTTGGCAGGCCCATAAAGGCCCAGTTCTGTCCATGGTCATG AGTTCCTACGGAGACTTATGGTCGGGATCAGAAGGAGGAGTGATAAAGATATGGCCATGGGAGAGCATCGAGAAATCCCTATCCCTAAAATCGGAAGAAA AGCGCATGGCAGCGCTGCTAGTAGAGAGATCAGCAATCGACCTAAGAAGCCAAGTCACCGTCAACGGCGTCTGCAGCATCTCTTCCTCCGACATCAAATG CATACTCTCCGACAACGCCCGAGCCAAGCTCTGGTGCGCGCAATCCCTAAATTTCTCCCTCTGGGACGCCCGCACCAAGGAGCTCCTCCGCGTGTTCAAC ATCGAAGGCCAGACCGAAAACCGCGTCGACGGCGGAGAAAAAGGCAACGACAAGGCCAACCAGCAGCAACAACAACACAATTTACATCAACAGCAGCAAT TACAGGAAGGCGGAGGAGGAGGGGATCAGGACGTGGTGGTGGTGCCGGAGCCGGCGCCGGAGGGGAAGGGGAAAGGGAAATCGGGGTCGAATAAGAAGGA GAAGTCTCAGGGGTTTCTTCAGAGGTCGAGAAATGCGATCATGGGGGCGGCTGATGCGGTTAGGAGAGTCGCGACGAGGGGGACGAACGCGTTTGTGGAG GATGCGAAGAAGACGGAGGCGGTTGTGATGACGGCGGATGGGATGATTTGGAGCGGGTGTACCAATGGGTTGATTATACAGTGGGATGGGAATGGGAATC GAGTTCAGGATTTTAATCTGATGGGTAACGTCTCTGTGCAGTGCTTCTGTACCTTTGGCACCCGGATCTTCGTCGGCTACGCCAGCGGGATTATCCAGGT GCTAGACCTGGAAGGACATCTGCTGACTATGTGGACGGCGCACAGTAATCCGGTGCTGAAGCTAGCCGTAGGGAAAGGCTACGTATTCAGCTTAGCAAGC CACGGTGGGATTCGGGGATGGAGCACCACTTCCCCTGGCCCTGTCGACAGCATCTTGAGGTCCGAACTGGCCGCCAAAGAGCTCACTTACACCAGAAAGG ATAGCTTCAGGGTCCTCATCGGCACCTGGAATGTGGGCCAAGGTAGGGCCTCTCAGGAGGCTATGATGTGTTGGCTGGGATCCACAGCTGCCGATGTAGG GATCGTGGTGGTCGGCCTCCAGGAAGTTGAGATGGGTGCCGGTTTCCTCGCCATGTCTGCCGCCAAAGAAACTGTAGGACTGGAAGGGAGTGCACTTGGG CAGTGGTGGCTTGACAATATTGGTAAAGCATTAGGGGAAGGATCCGTTTTTGAAAGGATGGGTTCTAGGCAACTAGCTGCATTGCTTGTCTCCGTCTGGG TAAGAAAGAACATGAGACAACATGTTGGAGATGTTGATGCTGGAGCAGTTGCTTGCGGGTTTGGACGAGCAATTGGTAATAAGGGAGGGGTAGGGGTGAG AATAAGGGTACGAGACAGGATAATGTGCTTCGTGAACTGTCACTTGGCAGCACATTTGGAAGCAGTGAATAGAAGGAACGCAGATTTCGATCACATATAT AGAAACATGGTGTTCGGGAAGCCTACATCAAGGGGCGTGGGCAGCGGCAACAGCGGTGGTGGTAGTAACTCTTCCGAGGACACAAAGCCAGAACTGTCTG ATGCAGATATGGTTGTGTTCTTCGGTGATTTTAACTACCGACTCTTTGGTATTTCCTATGATGAGGCCAGGGACTTCGTTTCCCAGCGCTCCTTTGACTG GCTCCGTGAGCGCGATCAGCTCCGCGCTGAGATGAAAGCTGGCAAAGTTTTCCCTGCCATGCGTGAAGCCATCATCACTTTCCCTCCTACCTACAAATTC GAGAAGGGCCTCCCCGGTTTAGGAGGTTATGATTCCGGGGAGAAGAAACGTATTCCTGCCTGGTGTGACAGGGTTATCTACCGCGATACTCGGCCTAGTT CGGTTTCACCAACACAAATTGAATGCAACTTGGAGTGCCCTGTTGTCTCTGCAGTTATCCAGTACGAAGCTTGCATGGATGTGGTTGAGAGTGACCATAA ACCTGTGCGGTGCAAGTTCCACATCCAAGTTGCTCATACTGACAGATCAGTGAGGAGGCAAGAGTTCGGCGAGATTCTCAAGAACAACGAGAAGATCCAG TCTCTGTTGCGGGAATCTTGCGTTGTTCCAGATACCACTGTCAGCACCAACACCATTGTCCTCCAAAACCAGGACACTTCTATTCTCAAGATCACCAACA AATCTGCAACGGACAAAGTTGTTTACAGGCTGTATTGTGAGGGCCAGGCTAATTTCAAGGATGAAGGAGACGAAGCTGAGTATCGTGCCAGAGGTTCCTA TGGCTTCCCCCGATGGCTTGAGGTCACACCGGCAGTTGGTATCATCAGGCCTGACAATAGTGTGGACGTCGCAGTGCACCATGAGGAATTTCATAGTCTA GAAGATTTAGTAGACGGCATCCCGCAGAACTGGTGGTGCGAAGACACCAGAGACAAGGAAGTGATCCTAGTCGTCGTTGTGCAAGGCAGTAACTCGACAG AGGCCACAACTCACCGGATCCAAGTTCGCCACTGCCTCTCGGCCAAAACACTTCGTGCAGACTCTATATCAGGCTCTCGCAGAGGCCAGGCAGGTGGAGG AGGTCAAGCTCAAAGAAGCGACCACAAGCAAGATGCAGCAGATGATTCTCGACAAAAGTCTTGA
AA sequence Show only first row Show all	>Lus10008330 pacid=23178469 polypeptide=Lus10008330 locus=Lus10008330.g ID=Lus10008330.BGIv1.0 annot-version=v1.0 MDAGDNKIEEEDKQALAGLSSVPQQHRAKVHSYSQQLRGGEKRHRQVRKHSLDDIPSGGRHFSNSASDDDFANYSLNLDEDSDGSLDLKPYNPLTEFVAS ATPTGSGSVSGGSTGGSTGGSSQGSGEGGSNSAVAASGGSGSGIFKVPTRAAVHPGRPPCLELRPHPLRETQVGKFLRNIACTETQLWAGQECGIRFWKF DRIYEAGGGLGGKVRRGDEDAAPFQESVNISPTFCLMADAANGLVWSGHKDGKIRSWKTEQKIDHEEGEDAAAAAATSPQPFKEGLSWQAHKGPVLSMVM SSYGDLWSGSEGGVIKIWPWESIEKSLSLKSEEKRMAALLVERSAIDLRSQVTVNGVCSISSSDIKCILSDNARAKLWCAQSLNFSLWDARTKELLRVFN IEGQTENRVDGGEKGNDKANQQQQQHNLHQQQQLQEGGGGGDQDVVVVPEPAPEGKGKGKSGSNKKEKSQGFLQRSRNAIMGAADAVRRVATRGTNAFVE DAKKTEAVVMTADGMIWSGCTNGLIIQWDGNGNRVQDFNLMGNVSVQCFCTFGTRIFVGYASGIIQVLDLEGHLLTMWTAHSNPVLKLAVGKGYVFSLAS HGGIRGWSTTSPGPVDSILRSELAAKELTYTRKDSFRVLIGTWNVGQGRASQEAMMCWLGSTAADVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSALG QWWLDNIGKALGEGSVFERMGSRQLAALLVSVWVRKNMRQHVGDVDAGAVACGFGRAIGNKGGVGVRIRVRDRIMCFVNCHLAAHLEAVNRRNADFDHIY RNMVFGKPTSRGVGSGNSGGGSNSSEDTKPELSDADMVVFFGDFNYRLFGISYDEARDFVSQRSFDWLRERDQLRAEMKAGKVFPAMREAIITFPPTYKF EKGLPGLGGYDSGEKKRIPAWCDRVIYRDTRPSSVSPTQIECNLECPVVSAVIQYEACMDVVESDHKPVRCKFHIQVAHTDRSVRRQEFGEILKNNEKIQ SLLRESCVVPDTTVSTNTIVLQNQDTSILKITNKSATDKVVYRLYCEGQANFKDEGDEAEYRARGSYGFPRWLEVTPAVGIIRPDNSVDVAVHHEEFHSL EDLVDGIPQNWWCEDTRDKEVILVVVVQGSNSTEATTHRIQVRHCLSAKTLRADSISGSRRGQAGGGGQAQRSDHKQDAADDSRQKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43900			Endonuclease/exonuclease/phosp...		Lus10008330 [exp]	0	1
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10008881 [exp]	10.5	0.8992
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10008606 [exp]	10.8	0.8636
AT1G16670			Protein kinase superfamily pro...		Lus10023510 [exp]	17.0	0.8857
AT1G18910			zinc ion binding;zinc ion bind...		Lus10042190 [exp]	19.5	0.8812
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10040300 [exp]	39.6	0.8414
					Lus10041686 [exp]	45.0	0.8711
AT1G76750			Protein of unknown function (D...		Lus10004548 [exp]	48.4	0.8584
AT1G11050			Protein kinase superfamily pro...		Lus10028553 [exp]	56.7	0.8547
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10039507 [exp]	70.2	0.8132
AT4G17550		AtG3Pp4	glycerol-3-phosphate permease ...		Lus10004358 [exp]	75.2	0.8271

Compare expression of checked genes

Lus10008330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.