Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05400 217 / 1e-70 copper ion binding (.1.2) AT4G21140 175 / 3e-54 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027072 [exp] 376 / 5e-133 AT4G05400 282 / 2e-96 copper ion binding (.1.2) Lus10035454 [exp] 140 / 2e-42 AT4G05400 109 / 4e-31 copper ion binding (.1.2) Lus10031070 [exp] 113 / 1e-31 AT4G05400 100 / 7e-27 copper ion binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G098000 [exp] 278 / 2e-94 AT4G05400 273 / 6e-93 copper ion binding (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008331 pacid=23178465 polypeptide=Lus10008331 locus=Lus10008331.g ID=Lus10008331.BGIv1.0 annot-version=v1.0 ATGTTTCAGATCGCGCCGAGAGCAGCAAAGCCTCTCGAATCTCTGACGCACCAATTGATCCAGCGATGTTCCGTCAGCGGCACTGCGAAAGGGAAAGCCA AGTTGAAAGATGGACCGAAGAAGAAGATGAAGGTGTCCACCAAGAAGGGCGGTAAAGGCGGTGCCGTCGATCTAGATCCTTCCGCCCGGCCAACTTCCCG TCAAGACGCGGAGAAGAACAAGCTATACGACCAGTGCATAAACGCCCCCACTCCGGTCCGGCACCTGAAGCCCAAGGAGTTGAAGCGGGAGGCGGAGAGG CAGAAGCTAGGGTTGGAGAGCAAAGAGCGGCTTCGGGAGAAGGAGATTCTGAAGAAAGGCGGGAGGCAGGCGATGGGAGTTCCTGACGAGCCGCTGATGA TGGGAACCCCCGGATTCGATCTCATCTCGCTTCTGATGATGGGAACCCCTGGATTCGATCTCATCTCGCTTGGATTGGTTGACGCGGATAAGATCCCGAA ATACGAGCTGACGGTGGAGGACGGGAGGAAGCTGGCGAAGGAGTACAGTAGGTTTTTGATGAGGAAGCACAGGGCGAGGCAGGCTGCGGAGACGAATCTG TTGAGGATGAAGAAGGAAGCGATCGAGGCGTTGCCGGATCAGCTGAAGATGGCTGCTCTTGTGCCGGACTTGACTCCGTTTCCTAAGGAGAGATTCATGG CCACGTTGACTCCTCCGATTGAGGGGTATATTGAGAAGGTTAAGGAGGCTGCAATGAGGAGTTCCGGTGCTCAGAAGATTAGATAA
AA sequence Show only first row Show all	>Lus10008331 pacid=23178465 polypeptide=Lus10008331 locus=Lus10008331.g ID=Lus10008331.BGIv1.0 annot-version=v1.0 MFQIAPRAAKPLESLTHQLIQRCSVSGTAKGKAKLKDGPKKKMKVSTKKGGKGGAVDLDPSARPTSRQDAEKNKLYDQCINAPTPVRHLKPKELKREAER QKLGLESKERLREKEILKKGGRQAMGVPDEPLMMGTPGFDLISLLMMGTPGFDLISLGLVDADKIPKYELTVEDGRKLAKEYSRFLMRKHRARQAAETNL LRMKKEAIEALPDQLKMAALVPDLTPFPKERFMATLTPPIEGYIEKVKEAAMRSSGAQKIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05400			copper ion binding (.1.2)		Lus10008331 [exp]	0	1
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007620 [exp]	1.7	0.9324
AT1G19480			DNA glycosylase superfamily pr...		Lus10010824 [exp]	4.9	0.9166
AT1G61790			Oligosaccharyltransferase comp...		Lus10007647 [exp]	5.3	0.9208
AT3G17130			Plant invertase/pectin methyle...		Lus10016319 [exp]	5.7	0.8887
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10018588 [exp]	6.7	0.9054
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10007579 [exp]	8.5	0.9033
AT4G29870			Oligosaccharyltransferase comp...		Lus10035623 [exp]	8.9	0.9106
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10009039 [exp]	9.5	0.9053
AT2G04280			unknown protein		Lus10041091 [exp]	10.2	0.8909
AT1G02816			Protein of unknown function, D...		Lus10010297 [exp]	11.0	0.9010

Compare expression of checked genes

Lus10008331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.