Gene [FLAX] | FIBexDB

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TF class	Alias	TAIR10 short description
AT4G32551	62 / 3e-10		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2)
AT2G32700	61 / 4e-10		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10027071 [exp]	398 / 5e-139	ND	42 / 8e-04
Lus10034174 [exp]	64 / 1e-12	ND	/
Lus10032614 [exp]	61 / 5e-10	AT2G32700	1073 / 0.0	MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7)
Lus10022797 [exp]	61 / 5e-10	AT2G32700	903 / 0.0	MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7)
Lus10017754 [exp]	61 / 5e-10	AT4G32551	778 / 0.0	ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2)
Lus10011863 [exp]	61 / 5e-10	AT2G32700	909 / 0.0	MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7)
Lus10043135 [exp]	56 / 3e-08	AT2G32700	1073 / 0.0	MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7)
Lus10033066 [exp]	52 / 5e-07	AT4G32551	746 / 0.0	ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.004G045601 [exp]	73 / 5e-14	AT2G32700	354 / 1e-111	MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7)
Potri.002G241800 [exp]	64 / 6e-11	AT2G32700	899 / 0.0	MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7)
Potri.003G178600 [exp]	62 / 2e-10	AT2G32700	1051 / 0.0	MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7)
Potri.001G049400 [exp]	62 / 2e-10	AT2G32700	1057 / 0.0	MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7)
Potri.006G248100 [exp]	61 / 7e-10	AT4G32551	996 / 0.0	ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2)
Potri.018G033300 [exp]	59 / 2e-09	AT4G32551	657 / 0.0	ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2)

PFAM info

Representative CDS sequence

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>Lus10008332 pacid=23178470 polypeptide=Lus10008332 locus=Lus10008332.g ID=Lus10008332.BGIv1.0 annot-version=v1.0

ATGGATCGAGTAAACCAGTGGGATGCACAAAAGATGTTTGACTTGTACTTGCTCGATTATATGAGAAAGAGGAACATGCATGTAACTGCCGCTCTGTTCA

GTGCGGAAGCCAATGTTCCTTTGGTTGATGTCGCATTCGACGACTCACCGGAAGGATTTCTACATGAATGGTGGACAATAATGCATGAAACACTTTCATC

TAGGTACCGTATGCATAATACCAAGGAGGTCCAACCACCGCCGATATCCCATGAAGAGATTCGTCAGCTGCTGGGGGTGCCAACCATGATCGCTCAACCA

CCACCACCACCATCACCACCATCACCATCACCACTGATTATATACCAACAGAGGCCTACGATGACATCTCGCAATCTTCCTATGGTGCCGGCAAGGAATT

TCAATCAACAACTACTTAACAGTTTCATGCATCCAGTAAGGGAACTGCCAGCAACTTCAACTTCTTCCAGTGTCGCGAATTTCAGCTACTTGCAGCAACA

ACCGGTCCATAGCCACCGGATTCACCAGATTCAGTATCCATTGATGATAACCAATGGGCCAAGGATCACAACTGGGGGAAACAGTGGCAGCATGATGGAA

TGTTCCACTTATGCAGCACAATTATTTAACTGCCGTGGAATTGTACCTCGTGATGCAGGAAGAACCATACAAAGTAATCCAATGCTGCAACTTGAAGGAT

CCCCAATAAACCCACAGTTGGAGGATCAAAATCATCAATCATCTATCTCTCTAGAAATGGAGCAAGTTCAACAAAACCCGACGGGCCAAGATGATGAAAA

TCTACAACAATTGCAGGAGGATTCTGGAAATTCACAACTTGAAACATTTGACGATCAAGAACTTGAAGAATTTGTCAACAGCTATGTTGATGGTCATAAT

ATCGACGAAGACTTTGCATTGATCGACTCAGGTCTTCAAGATATGACTAACAGCAAAGGTGGTATAGGTCACATTTTATATGGAGTTGCATAA

AA sequence

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>Lus10008332 pacid=23178470 polypeptide=Lus10008332 locus=Lus10008332.g ID=Lus10008332.BGIv1.0 annot-version=v1.0

MDRVNQWDAQKMFDLYLLDYMRKRNMHVTAALFSAEANVPLVDVAFDDSPEGFLHEWWTIMHETLSSRYRMHNTKEVQPPPISHEEIRQLLGVPTMIAQP

PPPPSPPSPSPLIIYQQRPTMTSRNLPMVPARNFNQQLLNSFMHPVRELPATSTSSSVANFSYLQQQPVHSHRIHQIQYPLMITNGPRITTGGNSGSMME

CSTYAAQLFNCRGIVPRDAGRTIQSNPMLQLEGSPINPQLEDQNHQSSISLEMEQVQQNPTGQDDENLQQLQEDSGNSQLETFDDQELEEFVNSYVDGHN

IDEDFALIDSGLQDMTNSKGGIGHILYGVA

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10008332 [exp]	0	1

Lus10008332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10008332 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10008332 coexpression network