Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38280 316 / 7e-98 PR5K PR5-like receptor kinase (.1) AT1G70250 316 / 2e-96 receptor serine/threonine kinase, putative (.1) AT1G66920 311 / 2e-96 Protein kinase superfamily protein (.1.2) AT1G66910 311 / 4e-96 Protein kinase superfamily protein (.1) AT1G66930 309 / 3e-95 Protein kinase superfamily protein (.1) AT1G67000 314 / 7e-95 Protein kinase superfamily protein (.1) AT5G39030 311 / 2e-94 Protein kinase superfamily protein (.1) AT5G38260 305 / 4e-94 Protein kinase superfamily protein (.1) AT1G66980 311 / 2e-92 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT5G39020 305 / 5e-92 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022359 [exp] 766 / 0 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025545 [exp] 574 / 0 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10025492 [exp] 511 / 9e-173 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10027085 [exp] 494 / 4e-172 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025544 [exp] 485 / 1e-165 AT5G39020 217 / 1e-62 Malectin/receptor-like protein kinase family protein (.1) Lus10027119 [exp] 467 / 3e-157 AT5G38260 210 / 3e-60 Protein kinase superfamily protein (.1) Lus10008362 [exp] 430 / 3e-143 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10025549 [exp] 393 / 3e-133 AT1G66980 209 / 1e-62 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10014924 [exp] 408 / 4e-133 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G034500 [exp] 447 / 4e-153 AT5G38260 336 / 6e-111 Protein kinase superfamily protein (.1) Potri.015G122000 [exp] 431 / 5e-146 AT5G38280 336 / 2e-110 PR5-like receptor kinase (.1) Potri.015G018600 [exp] 439 / 4e-145 AT1G66920 351 / 9e-113 Protein kinase superfamily protein (.1.2) Potri.007G125450 [exp] 436 / 1e-143 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.007G125800 [exp] 434 / 4e-143 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.017G009100 [exp] 433 / 3e-142 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.017G008800 [exp] 432 / 7e-142 AT5G38280 330 / 1e-103 PR5-like receptor kinase (.1) Potri.007G125000 [exp] 429 / 3e-141 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1) Potri.017G009600 [exp] 431 / 5e-141 AT4G18250 323 / 1e-98 receptor serine/threonine kinase, putative (.1) Potri.017G009400 [exp] 428 / 2e-140 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05724 [flax] [poplar] TPMT Thiopurine S-methyltransferase (TPMT) CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10008335 pacid=23178457 polypeptide=Lus10008335 locus=Lus10008335.g ID=Lus10008335.BGIv1.0 annot-version=v1.0 ATGTTGCGGTTGTTTTCACCTCCCCCCACCATCCTTTCCTCTCTCCGACCGCTATCGAACTCCGGTCGCCGAGCTGCTTATCTTCTTCACACCACGGGTG TACCAATGGAGAAGAAGAATCAGAATACCGCTGCCGAAGGAGACACAACCGCCGCCACCACGACTCCCAACTTCAAACCTGAGGTCAATAACATGCAACA ACTCCTCACCGATCACTCTTCCGGTGGTTGGGACAAGTGCTGGGAGCAAGGACTGATCCCGTGGGACTTGGGACGAACTACTCCAGTTATCTCGCATCTT CTTCAAGCAGGAACCCTACCTAAGGGCAGAGCTCTGGTTCCTGGATGTGGCACTGGTTATGATGTGGTGGCCATGGCATGCCCTGAACGTTTTGTTGTTG GATTGGAAATCTCTGACAAGGCGATTGAGAAAGCAAATCAGTTGTTTTCAATTCTGCCAAATTCAAGACACTTCACTTTCGTCAAGGCAGACTTCTTCAA CTGGAATCCATCTGAGAAGTTTGATTTGATTTTTGATTATACGTTCTTTTGTGCAATTGAACCAAAGATGAGACCCGAATGGGCCCGACAAATCAATGAT CTGCTTAGGCCGGATGGGGAGCTCATCACCCTTATTTTTCCGATAAGCGATCATGTTGGGGGGCCTCCCTATAAAGTTTCAGTTTCTGAGGTTTGTAGTT ATGAAGAGTTGCTACATCCTATGGGCTTCAAAGAAGTGTTGATTGCTGACAATGAACTGGCTGTTGGACCCCGGAAGGCAAGATTCCATGTTCAAGCAAT TAACTACAACAACTTGACAATCCGGTTGGTGGATGACAGTGTGTTGAGAGGAAACTGCTCCTTTCCCAACACCCCTTTGGATCTGCAAAGCTTTGATATC ATTGATGATATGTATGCTACCTGGAGATATAAAGGGAATACTCTCTCACTAGGAAGTGAACTACTTGATGAAGTGTTGACTCTGATCAGTTGTGAGAATG CTATGGTCGGTAGTTCTACAATGTTTATGATAACAGCTCCTTGCATCGACAAATCCACACATTCTTCGCCTTATTATTACTATTATGCGGTAATGGATGA TGGCCGTGGTGTGGATTTGCTTAGCTTGGGAAAGAAGTGCAAAGTGGAGATGATTCGTTTGTTACCAGCGGAAGAATTCATTCAGAATCATAACCTCATG CCAATCAGGTACTCTTACTCACAAATCAAAACGTTCACTAACGGCTTCAAAGACAAGCTAGGTGAAGGCCGATTTGGTTCTGTTTACAAGGGCAAGCTCC GGAGTGGTAGTTTTGCAGCCGTAAAGATGCTGGGAAAGTCCACTGCTGGCGGAGTCCAAGACTTTATTAACGAAGTTGCTACCATTGGAACGATTCACCA TGCTAATGTAGTGAGACTTGTCGGCTTCTGCTCTGAAGGATCGAAGCGTGCTCTCGATTACGAGTTCATGCCAAATGGTTCCCTTGACAAGTACATCTTT TGCAAGCAACAAGGATACGCAACTTTGAGCTTGGAACAACTGTATCGCATTTCTATCGGAGTGGCTCGTGGGATCGAATATCTGCATAGCGGGTGTGTCA TGCAGATTCTTCATTTCGACATCAAGCCCCACAACGTTCTTCTTGACAACAACTTTAACCCAAAATTGTCGGACTTTGGGTTGGCTAGGCTGTATTATGC AGGTGATACAGTTGCAACTCTAACTGCAGCAAGGGGAACCATCGGGTACATGGCGCCAGAGCTGTTCTACAGGAACATCGGTAGCGTATCTTACAAAGCT GATGTATATAGCTTTGGGATGTTACTGTTGGACATGGCAGAGAAAAGGCATAACTTGAATGCTGCAACAGGTCATTCTAGTCAAGTTTACTTCCCGTTCT GGGTTCATGATCAGGTTGTGTCCACACCTGGAACTCCTATTGTAGTTGGAGATGATGTAACGAAAGAGGAGAATGAGATTGCAGAGAAGATGGTGATTGT AGGGTTGTGGTGCATCCAGACGAATCCTGAAAGTCGTCCTCCGATGAACAAAGTGGTGGAGATGCTTGAAGGAGAGCTGGAAGGCATACCTCTGCCTCCC AGACCTATGTTGTATGCTGGAGAATCTGTAAGGAACATCGAAGAAGGATCGCCGTCGTCTTTCATGTCATCGCAGTAG
AA sequence Show only first row Show all	>Lus10008335 pacid=23178457 polypeptide=Lus10008335 locus=Lus10008335.g ID=Lus10008335.BGIv1.0 annot-version=v1.0 MLRLFSPPPTILSSLRPLSNSGRRAAYLLHTTGVPMEKKNQNTAAEGDTTAATTTPNFKPEVNNMQQLLTDHSSGGWDKCWEQGLIPWDLGRTTPVISHL LQAGTLPKGRALVPGCGTGYDVVAMACPERFVVGLEISDKAIEKANQLFSILPNSRHFTFVKADFFNWNPSEKFDLIFDYTFFCAIEPKMRPEWARQIND LLRPDGELITLIFPISDHVGGPPYKVSVSEVCSYEELLHPMGFKEVLIADNELAVGPRKARFHVQAINYNNLTIRLVDDSVLRGNCSFPNTPLDLQSFDI IDDMYATWRYKGNTLSLGSELLDEVLTLISCENAMVGSSTMFMITAPCIDKSTHSSPYYYYYAVMDDGRGVDLLSLGKKCKVEMIRLLPAEEFIQNHNLM PIRYSYSQIKTFTNGFKDKLGEGRFGSVYKGKLRSGSFAAVKMLGKSTAGGVQDFINEVATIGTIHHANVVRLVGFCSEGSKRALDYEFMPNGSLDKYIF CKQQGYATLSLEQLYRISIGVARGIEYLHSGCVMQILHFDIKPHNVLLDNNFNPKLSDFGLARLYYAGDTVATLTAARGTIGYMAPELFYRNIGSVSYKA DVYSFGMLLLDMAEKRHNLNAATGHSSQVYFPFWVHDQVVSTPGTPIVVGDDVTKEENEIAEKMVIVGLWCIQTNPESRPPMNKVVEMLEGELEGIPLPP RPMLYAGESVRNIEEGSPSSFMSSQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70250			receptor serine/threonine kina...		Lus10008335 [exp]	0	1
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Lus10014067 [exp]	12.8	0.7754
AT5G14880			Potassium transporter family p...		Lus10014531 [exp]	24.0	0.7424
AT5G10320			unknown protein		Lus10000634 [exp]	26.0	0.7296
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10013086 [exp]	30.3	0.7277
AT5G46390			Peptidase S41 family protein (...		Lus10004545 [exp]	34.6	0.7273
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10030161 [exp]	36.7	0.7091
AT5G53760		ATMLO11, MLO11	MILDEW RESISTANCE LOCUS O 11, ...		Lus10043085 [exp]	40.6	0.6687
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10007064 [exp]	53.6	0.7202
AT3G07670			Rubisco methyltransferase fami...		Lus10012309 [exp]	58.0	0.7153
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10042995 [exp]	61.2	0.6959

Compare expression of checked genes

Lus10008335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.