Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26455 114 / 8e-27 WIP1 WPP domain interacting protein 1 (.1) AT5G56210 102 / 8e-23 WIP2 WPP domain interacting protein 2 (.1) AT3G13360 98 / 2e-21 WIP3 WPP domain interacting protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027087 [exp] 964 / 0 AT4G26455 140 / 1e-35 WPP domain interacting protein 1 (.1) Lus10002005 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G472000 [exp] 310 / 3e-97 AT4G26455 194 / 1e-54 WPP domain interacting protein 1 (.1) Potri.011G169000 [exp] 291 / 2e-90 AT5G56210 181 / 8e-50 WPP domain interacting protein 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008336 pacid=23178479 polypeptide=Lus10008336 locus=Lus10008336.g ID=Lus10008336.BGIv1.0 annot-version=v1.0 ATGGATTTGCTAGATAAATCTGCTACTGCTCTTGATTTTGTGGTGGAGGGTGAATTGGCTACCAGTGTCACCAGCAGCAGATCTCCTCGGAGTGTTGATG GCAATGGAAAACTCGAGGCTAATGGATCGTGTGTGGATGCGATCCCCAGCTTTGAAGCTGGCGAGGATGTTGGCAGCATTACGCCATTAGGGAGCAAGGA AGTGGTGGGTTTATCCGATTCATCTCCTTCTGCAGGGTCGTCTTCTCCTGCAATCAAAGGGTATGGTCTGAAGAAATGGAGACGGATTAGGAGGGATGTA GTTAAGGATACTAGTGGCGTCTCAGATAGTAGCAAACCTGTGAAGAGGGGTTTATCAGGGGCTGGAGCTTCAGTCAGGTCGGTGAATCGGGGATCAGTGG AGAATAATAGGGAAGCTAGTGAGGTTTTTGTTGGCCCAAGTTTTGGTTATGAGAACGGTGTTCCTGGATCTAGTTCGGATTCTAGGTTTGCTGTTGGTTC TGCTTTTAACACTGGTGCCGACTCAGAGAATAGTGTTAGTGAGGACCGGAGTAGTAAGTCCTCGACAGCAGCAAGTGCTCCAAGAGCAAGGAATGACCTT GGTGGTGGATCTGGGTATGGGGTGGAGAATCAAAGAATCAAATCTTACCCTGTAAAGGTTGCTGGAAGTTCAGTTCAACGGGGTCAACAAGGGAAGGGGA ATATGGAGAGTAGTAAGAAGGCTAGAGGAGAGAGGGCCAAGATTGAGAAACAAAGCTCTCATTCCAGTATGGAATCTGATTCAAGAAGCTCTAATTTTGT TTTCAGTCAGGGACTCTATTCAGCGACCAGCAATGGGAAGCAGAGTGAAATGTCAATGAATGATGATGGAGAAGAGAATAGCGTTGAAGCACATGGTTGT GAGGAACAAGATATTGAGGAACTTCGGACTAGGTATGATCATGAGACTGTTGACGAAGTTGAAGATCATTCCCATGATGATCCGGCTGTTCATGCATCAT CTCATAATAAAGGAGAAAAAAATGAGAGTAACGATTCTTCAACAGAGAAGGATACCTTGGTTGAATCTCTGATTATGCTCCAGGCCGTGCAGGAAGCCCT TGAAAGTGAGATCAACAAATTTGGAGAGATTGGGAAGATCAGCTCTCCTATAGATCCCCCTCACACAAACGCAACTGCATCAAGCTCATTCAGTCAGTTT GAAGCAGGAAAGGTCGAGGAAGTATCAATGCCATTTCAAAATGCAAAACATCTAGAAAGCAGGCTGAAGGAGGTGCTGACAATGGTGTGCTCGAAGGAGG CCAAGGTCGCCGAACTAGAAGAAAAATGGAAGCGCGGCGAGTCAGATAACCGAGAGCTAGAGGCAGACTTCAAAAGTCGATCAGAGGAGATGGAGATCGA GCTCGAGGCCCTGTTCGTGCAGAAGATCGAGGCCGAGGTTCAATGTCTGACGTTGAGAAAGACATTGCAGGAGTCGAACTCCAATGAAAGCAACCACAGG GAACCACTTTCTGCGGAAATTAAAGCTCTAATTGGAGAGCAGGAGCAAATGCGGCAGAAAGTGAGTTTAGTGGAGAACAAGGCCATGGCTATCAAGAAGA GTGCAGAGGAAGTGACGAAGCACCGAGGGGAAGTTCTCGACGCCGAAGAAGAGGGGTCGAATATTCGGAAGGGGATACGTAAAACGGTGACATGTTTCTT GATCCAGTTAGTGCTGCTGGTCTTGGTTCTTTGGCTTATGGTTGTGGAGATGTCTACCCGGAATGGAGTTGTTGTAGTACCCACATGA
AA sequence Show only first row Show all	>Lus10008336 pacid=23178479 polypeptide=Lus10008336 locus=Lus10008336.g ID=Lus10008336.BGIv1.0 annot-version=v1.0 MDLLDKSATALDFVVEGELATSVTSSRSPRSVDGNGKLEANGSCVDAIPSFEAGEDVGSITPLGSKEVVGLSDSSPSAGSSSPAIKGYGLKKWRRIRRDV VKDTSGVSDSSKPVKRGLSGAGASVRSVNRGSVENNREASEVFVGPSFGYENGVPGSSSDSRFAVGSAFNTGADSENSVSEDRSSKSSTAASAPRARNDL GGGSGYGVENQRIKSYPVKVAGSSVQRGQQGKGNMESSKKARGERAKIEKQSSHSSMESDSRSSNFVFSQGLYSATSNGKQSEMSMNDDGEENSVEAHGC EEQDIEELRTRYDHETVDEVEDHSHDDPAVHASSHNKGEKNESNDSSTEKDTLVESLIMLQAVQEALESEINKFGEIGKISSPIDPPHTNATASSSFSQF EAGKVEEVSMPFQNAKHLESRLKEVLTMVCSKEAKVAELEEKWKRGESDNRELEADFKSRSEEMEIELEALFVQKIEAEVQCLTLRKTLQESNSNESNHR EPLSAEIKALIGEQEQMRQKVSLVENKAMAIKKSAEEVTKHRGEVLDAEEEGSNIRKGIRKTVTCFLIQLVLLVLVLWLMVVEMSTRNGVVVVPT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26455		WIP1	WPP domain interacting protein...		Lus10008336 [exp]	0	1
AT1G69430			unknown protein		Lus10037135 [exp]	1.0	0.9230
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10000808 [exp]	6.9	0.8791
AT1G51540			Galactose oxidase/kelch repeat...		Lus10034826 [exp]	7.3	0.8781
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10034642 [exp]	9.6	0.8737
AT3G19870			unknown protein		Lus10030556 [exp]	14.1	0.8659
AT5G57460			unknown protein		Lus10007798 [exp]	15.5	0.8492
AT1G79920		AtHsp70-15	heat shock protein 70-15, Heat...		Lus10011463 [exp]	17.2	0.8581
AT1G34130		STT3B	staurosporin and temperature s...		Lus10017990 [exp]	17.6	0.8708
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Lus10003967 [exp]	17.9	0.8532
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Lus10031032 [exp]	20.6	0.8614

Compare expression of checked genes

Lus10008336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.