Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44060 466 / 5e-166 Late embryogenesis abundant protein, group 2 (.1.2) AT2G46140 78 / 4e-17 Late embryogenesis abundant protein (.1) AT1G01470 77 / 1e-16 LSR3, LEA14 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019367 [exp] 168 / 2e-51 AT2G44060 135 / 1e-39 Late embryogenesis abundant protein, group 2 (.1.2) Lus10036402 [exp] 94 / 6e-23 AT1G01470 167 / 4e-54 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10010140 [exp] 92 / 6e-22 AT1G01470 191 / 3e-63 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10007905 [exp] 91 / 6e-22 AT1G01470 170 / 2e-55 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10001869 [exp] 82 / 1e-18 AT1G01470 182 / 1e-59 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10010139 [exp] 81 / 3e-18 AT1G01470 182 / 6e-60 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10001876 [exp] 84 / 2e-17 AT1G01470 178 / 3e-54 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G146300 [exp] 493 / 1e-176 AT2G44060 448 / 2e-159 Late embryogenesis abundant protein, group 2 (.1.2) Potri.014G090800 [exp] 79 / 2e-17 AT2G46140 206 / 5e-69 Late embryogenesis abundant protein (.1) Potri.002G165000 [exp] 77 / 5e-17 AT2G46140 189 / 3e-62 Late embryogenesis abundant protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10008337 pacid=23178473 polypeptide=Lus10008337 locus=Lus10008337.g ID=Lus10008337.BGIv1.0 annot-version=v1.0 ATGTCGTCTTCCGATAACATTAAAGTAGTCGATCGAGCCACTGAAGATAAGGATGAAAAGGAGGAGGGTGGGTTTCTAGACAAGGTGAAGGGATTCATCC AGGATGTTGGCGAGAAGATTGAGGAAACAATCGGATTCGGCAAGCCAACTGCTGATGTGACTGAGATTCACCTGCCTTGCATCAATCTCGAGAAGGCCGA TATAGTCGTTGATGTGCTTATCAAGAACCCTAACCCTGTCCCGATCCCTCTGATTGACATCAACTACTTAATCGAGAGTGATGGGAGGAAATTGGTCTCT GGACTGATCCCGGATGCTGGTACTATCCACGCCCATGGCGAGGAGACTGTTAAGATACCGTTGACTTTGATTTACGACGACATCAAGAGCACTTACCAAG ATATTCAGCCTGGAAGTATCATCCCTTACAGAATGAAGGTCGACCTCCTCGTGGATGTGCCAGTGTTTGGGCGGATCACTCTGCCAATGGAGAAAACCGG GGAGATTCCTGTGCCGTACAAGCCTGACGTTGACATGGAGAAGATAAAATTCGAGACTTTTTCGTTTGAGGAGACTGTTGCGGTGCTTCATGTGAGGATA GAGAACATGAACGACTTTGATTTGGGTCTGAATTCGCTGAACTTTGAGATTTGGCTGTCTGATGTGAGCATTGGATGTGCTGAGCTTTCCAAAGGTGCTA CGATTGCGAAGAAGGGAGTGAGCTACGTTGACATTCCGATCACCTTCAGGCCTAAGGATTTTGGATCTGCTCTTTGGGACATGATCCGGGGTAGAGGTAC TGGTTACACCTTGAAAGGGAATGTTCATGTGGACACTCCTTTTGGAGAGATGAAACTGCCCATTACAAAGGAAGGTGGGACGACTCGCCTGAAGAAGAAC AAAGAAGATGGCGGAGATGATGATGATGATGAGTTCAGATCATTAATTGGTTTTCGTATCCCAGTTCCACTGTACAAGATTAGGGCACAGGATTTGCAGG CCATTGCCAGGTACGAGAAGGTGCTGAGTGTATTAAGAGAGAATAATAATGTGGGTTATGAAATACCATGTAGTACGAATTGA
AA sequence Show only first row Show all	>Lus10008337 pacid=23178473 polypeptide=Lus10008337 locus=Lus10008337.g ID=Lus10008337.BGIv1.0 annot-version=v1.0 MSSSDNIKVVDRATEDKDEKEEGGFLDKVKGFIQDVGEKIEETIGFGKPTADVTEIHLPCINLEKADIVVDVLIKNPNPVPIPLIDINYLIESDGRKLVS GLIPDAGTIHAHGEETVKIPLTLIYDDIKSTYQDIQPGSIIPYRMKVDLLVDVPVFGRITLPMEKTGEIPVPYKPDVDMEKIKFETFSFEETVAVLHVRI ENMNDFDLGLNSLNFEIWLSDVSIGCAELSKGATIAKKGVSYVDIPITFRPKDFGSALWDMIRGRGTGYTLKGNVHVDTPFGEMKLPITKEGGTTRLKKN KEDGGDDDDDEFRSLIGFRIPVPLYKIRAQDLQAIARYEKVLSVLRENNNVGYEIPCSTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44060			Late embryogenesis abundant pr...		Lus10008337 [exp]	0	1
AT5G40250			RING/U-box superfamily protein...		Lus10014526 [exp]	4.9	0.7925
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10019509 [exp]	7.3	0.8147
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10029144 [exp]	7.9	0.8048
AT4G34215			Domain of unknown function (DU...		Lus10019817 [exp]	10.2	0.7822
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10040611 [exp]	10.5	0.7506
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Lus10020106 [exp]	11.8	0.7519
AT4G21215			unknown protein		Lus10006757 [exp]	13.4	0.7888
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10000046 [exp]	16.9	0.7657
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10006571 [exp]	19.4	0.7858
AT1G80630			RNI-like superfamily protein (...		Lus10024070 [exp]	19.8	0.7501

Compare expression of checked genes

Lus10008337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.