Plant FIBer expression Database

Lus10008338 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G59800 148 / 4e-45 unknown protein
AT2G43795 125 / 1e-36 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027089
[exp]
138 / 1e-42 AT3G59800 111 / 1e-32 unknown protein
Lus10027090
[exp]
59 / 4e-11 AT2G43795 54 / 7e-10 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G139900
[exp]
190 / 2e-61 AT3G59800 150 / 6e-46 unknown protein
Potri.017G010100
[exp]
189 / 3e-61 AT3G59800 147 / 4e-45 unknown protein
PFAM info
Representative CDS sequence
>Lus10008338 pacid=23178486 polypeptide=Lus10008338 locus=Lus10008338.g ID=Lus10008338.BGIv1.0 annot-version=v1.0
ATGGGTAAAAATCAAGCTTACAAAGCTATGCAGAAAGCAAGGCTTGGCTCAAGCTCTGCAGGTCCAGATGAGGTTGAAGATGGCATGTCGCAGGTGGATG
GTTCTTTTCATACACCAGAGTGGCATGCTGCTCGTTTGGCTAGCCTCAACACTTCTCATACAATTACCTGGGAGGAGTACAAGAAGAAGCAGAAGGAAGA
CGAATTGAGAAAGGGTGAACAGGAGAAAGATACGGATAGAATGATGCGCGAGTACAGAGCCCAGCTGGATGCTGAAAGGGCGCACAAACTTGCTCATGGA
AGGAACCATTCCAGTGTCAAGTCTAGCAATAAAAGAGATAAGAAGGAGAAAGATTCAAAGAAACAGCGGGGTAAAAAGAGAAAGCACTCCAGACGCAGGT
CTCCAGATTCCAGTTCGATGAGCTCATCATCCTCGGATGAATCAAGTAGCGACGACGAGGAGAGGGAGTCAAAGAGGTCAAAATCAAGGAGTAGTAGGAG
CAGGAAGAAGGAAAAACGCCACAGGTCAAGAAGCAAGCGTTCCGCTGTGGACAATGAAGATGGCAATGGCCCGGTTCCACTTTCCAGATTCTTTGGGAAC
GTGAAGAGCTAG
AA sequence
>Lus10008338 pacid=23178486 polypeptide=Lus10008338 locus=Lus10008338.g ID=Lus10008338.BGIv1.0 annot-version=v1.0
MGKNQAYKAMQKARLGSSSAGPDEVEDGMSQVDGSFHTPEWHAARLASLNTSHTITWEEYKKKQKEDELRKGEQEKDTDRMMREYRAQLDAERAHKLAHG
RNHSSVKSSNKRDKKEKDSKKQRGKKRKHSRRRSPDSSSMSSSSSDESSSDDEERESKRSKSRSSRSRKKEKRHRSRSKRSAVDNEDGNGPVPLSRFFGN
VKS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G59800 unknown protein Lus10008338
[exp]
0 1
AT2G26990 COP12, ATCSN2, ... FUSCA 12, CONSTITUTIVE PHOTOMO... Lus10037417
[exp]
7.1 0.8669
AT4G14110 FUS7, EMB143, C... FUSCA 7, EMBRYO DEFECTIVE 143,... Lus10005729
[exp]
10.4 0.8331
AT4G17010 unknown protein Lus10001160
[exp]
11.5 0.8436
AT4G21800 QQT2 quatre-quart2, P-loop containi... Lus10019602
[exp]
11.8 0.8348
AT2G37680 PAT3, FRY1, FHY... unknown protein Lus10023781
[exp]
12.3 0.8318
AT4G21585 ENDO4 endonuclease 4 (.1) Lus10018451
[exp]
13.1 0.8400
AT2G01060 GARP myb-like HTH transcriptional r... Lus10005036
[exp]
22.0 0.7792
AT4G21800 QQT2 quatre-quart2, P-loop containi... Lus10040022
[exp]
22.2 0.8245
AT5G08420 RNA-binding KH domain-containi... Lus10026187
[exp]
24.7 0.8264
AT5G18540 unknown protein Lus10033960
[exp]
25.0 0.7961

Lus10008338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.