Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43790 683 / 0 ATMAPK6, MAPK6, ATMPK6 MAP kinase 6 (.1) AT3G45640 590 / 0 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1) AT4G01370 564 / 0 ATMPK4 MAP kinase 4 (.1) AT3G59790 563 / 0 ATMPK10 MAP kinase 10 (.1) AT4G11330 550 / 0 ATMPK5 MAP kinase 5 (.1) AT1G07880 538 / 0 ATMPK13 Protein kinase superfamily protein (.1.2) AT1G01560 536 / 0 ATMPK11 MAP kinase 11 (.1.2) AT2G46070 523 / 0 MAPK12, ATMPK12 mitogen-activated protein kinase 12 (.1.2) AT2G18170 417 / 5e-145 ATMPK7 MAP kinase 7 (.1) AT1G10210 414 / 9e-144 ATMPK1 mitogen-activated protein kinase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027091 [exp] 791 / 0 AT2G43790 692 / 0.0 MAP kinase 6 (.1) Lus10036136 [exp] 608 / 0 AT3G45640 654 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10018127 [exp] 604 / 0 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10024668 [exp] 577 / 0 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Lus10007921 [exp] 573 / 0 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10017518 [exp] 570 / 0 AT4G01370 632 / 0.0 MAP kinase 4 (.1) Lus10028765 [exp] 565 / 0 AT4G01370 630 / 0.0 MAP kinase 4 (.1) Lus10036384 [exp] 559 / 0 AT4G01370 681 / 0.0 MAP kinase 4 (.1) Lus10023339 [exp] 540 / 0 AT3G45640 565 / 0.0 mitogen-activated protein kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G139800 [exp] 726 / 0 AT2G43790 684 / 0.0 MAP kinase 6 (.1) Potri.017G010200 [exp] 716 / 0 AT2G43790 677 / 0.0 MAP kinase 6 (.1) Potri.009G066100 [exp] 615 / 0 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.001G271700 [exp] 600 / 0 AT3G45640 640 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.003G131800 [exp] 577 / 0 AT4G01370 656 / 0.0 MAP kinase 4 (.1) Potri.001G099900 [exp] 569 / 0 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Potri.002G162500 [exp] 563 / 0 AT4G01370 684 / 0.0 MAP kinase 4 (.1) Potri.014G088500 [exp] 560 / 0 AT4G01370 676 / 0.0 MAP kinase 4 (.1) Potri.005G231100 [exp] 433 / 3e-151 AT1G59580 617 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.002G032100 [exp] 426 / 3e-148 AT1G59580 624 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10008339 pacid=23178490 polypeptide=Lus10008339 locus=Lus10008339.g ID=Lus10008339.BGIv1.0 annot-version=v1.0 ATGGACGGAGGAGCAACTGTTCCCTTCCCGCCAGCTGACACCGAGATGGCGGATGCGCAGCCGGCTCAACCCCCTCCCGGCGCCGCTGACCACCACCAAC AGCAGCAACAGCAGGTTCCGCCTCCGGGAGGGATCGAGAATATTCCGGCGACGCTAAGCCACGGCGGACGCTTCATCCAATACAACATTTTCGGCAACAT TTTCGAGGTCACCGCCAAGTATAAGCCTCCAATCATGCCTATTGGCAAGGGCGCGTACGGAATCGTCTGCTCGGCTTTGAACTCGGAGACCGCGGAGCAT GTGGCGATTAAGAAGATTGCAAATGCTTTTGATAATAAGATTGATGCCAAGAGGACTCTTCGCGAGATCAAGCTTCTCCGTCACATGGACCACGAAAATG TGGTTGCCATCAGGGATATAATTCCGCCACCCCTGAGAGAGTCATTTAATGATGTCTATATTGCATATGAACTGATGGACACCGATCTACATCAGATTAT CAGGTCGAATCAAGGATTGTCAGAGGAGCACTGCCAGTATTTCTTGTACCAAATCCTTCGTGGCTTGAAATATATCCATTCAGCAAACGTTCTACACAGA GATCTAAAGCCAAGCAATCTTCTCCTGAATGCAAATTGTGATCTGAAGATTTGTGACTTTGGGCTTGCTCGTGTTACCTCCGAGACTGATTTCATGACTG AATATGTTGTTACAAGATGGTACAGAGCACCAGAGTTGTTGTTGAACTCCTCTGATTATACCGCTGCAATTGATGTATGGTCAGTTGGTTGCATATTTAT GGAGTTGATGGACCGGAAGCCCCTTTTTCCTGGACGGGATCATGTCCACCAGCTTCGCTTGTTAATGGAGCTCATTGGCACCCCTTCAGAGGCTGAGCTG GGGTTTCTAAATGAGAATGCAAAGCGATACATCCGCCAACTTCCTCTCTATCGGCGTCAATCATTCACCGAAAAGTTTCCAACTGTGCACCCGTCAGCTA TCGATCTCGTAAAGAAGATGCTAACATTTGATCCCCGGCAGAGAATAACAGTTGAAGATGCGCTTGCTCATCCATACCTGAACTCGCTCCATGACATTAG CGACGAGCCAGTGTGCACGACCCCCTTCAGTTTCGACTTTGAGCAGCGTGCACTGACGGAAGAGCAGATGAAGGAGCTGATATATAGGGAGGCTTTAGCG TTCAACCCGGACTATGACCCTTCGACGTTTGATCAGAATGCTTTCTAG
AA sequence Show only first row Show all	>Lus10008339 pacid=23178490 polypeptide=Lus10008339 locus=Lus10008339.g ID=Lus10008339.BGIv1.0 annot-version=v1.0 MDGGATVPFPPADTEMADAQPAQPPPGAADHHQQQQQQVPPPGGIENIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETAEH VAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIIPPPLRESFNDVYIAYELMDTDLHQIIRSNQGLSEEHCQYFLYQILRGLKYIHSANVLHR DLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLMELIGTPSEAEL GFLNENAKRYIRQLPLYRRQSFTEKFPTVHPSAIDLVKKMLTFDPRQRITVEDALAHPYLNSLHDISDEPVCTTPFSFDFEQRALTEEQMKELIYREALA FNPDYDPSTFDQNAF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10008339 [exp]	0	1
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Lus10023237 [exp]	1.4	0.9083
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Lus10010161 [exp]	1.7	0.8976
AT5G61900		CPN1, BON1	COPINE 1, BONZAI 1, Calcium-de...		Lus10043206 [exp]	3.6	0.8692
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10017361 [exp]	4.2	0.8839
AT5G50000			Protein kinase superfamily pro...		Lus10042129 [exp]	7.3	0.8617
AT2G23070			Protein kinase superfamily pro...		Lus10019296 [exp]	9.2	0.8900
AT5G04700			Ankyrin repeat family protein ...		Lus10019887 [exp]	10.7	0.8617
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Lus10041465 [exp]	11.4	0.8297
AT5G36880		ACS	acetyl-CoA synthetase (.1.2)		Lus10041499 [exp]	12.7	0.9029
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Lus10013850 [exp]	13.0	0.8673

Compare expression of checked genes

Lus10008339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.