Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59920 773 / 0 ATGDI2 RAB GDP dissociation inhibitor 2 (.1) AT2G44100 767 / 0 AT-GDI1, ATGDI1 guanosine nucleotide diphosphate dissociation inhibitor 1 (.1.2) AT5G09550 741 / 0 GDP dissociation inhibitor family protein / Rab GTPase activator family protein (.1) AT3G06540 96 / 6e-21 AthREP Rab escort protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027094 [exp] 887 / 0 AT3G59920 800 / 0.0 RAB GDP dissociation inhibitor 2 (.1) Lus10035634 [exp] 723 / 0 AT5G09550 778 / 0.0 GDP dissociation inhibitor family protein / Rab GTPase activator family protein (.1) Lus10010760 [exp] 721 / 0 AT5G09550 778 / 0.0 GDP dissociation inhibitor family protein / Rab GTPase activator family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G001200 [exp] 833 / 0 AT2G44100 776 / 0.0 guanosine nucleotide diphosphate dissociation inhibitor 1 (.1.2) Potri.007G146600 [exp] 823 / 0 AT2G44100 777 / 0.0 guanosine nucleotide diphosphate dissociation inhibitor 1 (.1.2) Potri.007G115300 [exp] 755 / 0 AT5G09550 785 / 0.0 GDP dissociation inhibitor family protein / Rab GTPase activator family protein (.1) Potri.005G028900 [exp] 119 / 8e-29 AT3G06540 605 / 0.0 Rab escort protein (.1) Potri.005G030000 [exp] 110 / 8e-26 AT3G06540 602 / 0.0 Rab escort protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00996 [flax] [poplar] GDI GDP dissociation inhibitor
Representative CDS sequence Show only first row Show all	>Lus10008341 pacid=23178450 polypeptide=Lus10008341 locus=Lus10008341.g ID=Lus10008341.BGIv1.0 annot-version=v1.0 ATGGATGAAGAGTACGACGTGATCGTGCTGGGAACTGGTCTCAAAGAATGTATTCTCAGTGGTCTTCTTTCCGTCGACGGCCTCAAGGTCCTGCATATGG ATAGGAATGACTATTATGGAGGAGAATCTGCATCACTTAACCTTATTCAGCTCTGGAAGAGGTTCAGGGGAACTGAACAACCTCCAGCAAGCCTGGGTGC GAGTAGGGATTATAATGTGGACATGATCCCTAAGTTTATGATGGCCAATGGAAATCTTGTTCGAGTACTTATTCATACTGATGTGACAAAGTATCTGTCC TTCAAAGCCGTGGATGGTAGCTTTGTCTACAACAAAGGAAAGGTTCACAAGGTGCCAGCAACTGACATGGAGGCATTAAAGTCTCCCCTTATGGGTATCT TTGAAAAGCGCAGAGCTCGCAAGTTTTTCATCTATGTCCAAGATTATAATGAAAGTGATCCTAAAACACATGATGGAATGGACTTGACCAGAGTTACAAC AAAAGAATTGATTGCGAAATATGGTCTTGATGACAACACCATAGACTTCATTGGTCATTCATTGGCTCTTCATAGGGATGATCGATATCTTAATGAACCT GCTCTAGATACAGTGAAGAGAATGAAGCTGTATGCCGAGTCTCTTGCTCGTTTTCAGGGTGGATCTCCTTATATTTACCCCTTGTATGGATTAGGAGAGT TGCCACAGGCATTTGCACGGCTCAGTGCTGTTTATGGTGGCACTTATATGTTGAATAAACCTGAGTGTAAGGTAGAGTTTGAGGATGGCAAAGTTGTTGG TGTTACCTCCGAAGGAGAAACTGCTAAGTGCAAGAAAGTAGTTTGTGACCCTTCCTACTTGCCTGGAAAGGTTAGGAAGGTCGGCAAAGTGGCTAGGGCA ATTGCCATCATGAGCCACCCAATTCCCAGCACCAACGACTCTCATTCAGTACAGGTTATTCTGCCACAGAAGCAGTTGGGTCGCAGATCGGACATGTACC TTTTCTGCTGCTCTTACACTCACAACGTTGCTCCAAGGGGAAAGTTCATTGCTTTTGTATCGACTGAGGCAGAGACTGATAACCCTCAGGCGGAGTTGAA GCCAGGAATTGACCTTCTTGGTCCAGTTGATGAGATATTCTTTGAGATCTATGACAGATTTGAGCCTGTGAACGAGCCTTCTCTGGACAATTGTTTCATA TCTACCAGTTATGATCCCACAACACACTTCGAGTCGACTGTGACAGATGTCTTGAACATGTACACAATGATAACTGGAAAGAATCTGGACCTGAGTGTGG ATTTGAGCGCTGCAAGCGCTGCAGAAGACTGA
AA sequence Show only first row Show all	>Lus10008341 pacid=23178450 polypeptide=Lus10008341 locus=Lus10008341.g ID=Lus10008341.BGIv1.0 annot-version=v1.0 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESASLNLIQLWKRFRGTEQPPASLGASRDYNVDMIPKFMMANGNLVRVLIHTDVTKYLS FKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYNESDPKTHDGMDLTRVTTKELIAKYGLDDNTIDFIGHSLALHRDDRYLNEP ALDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFEDGKVVGVTSEGETAKCKKVVCDPSYLPGKVRKVGKVARA IAIMSHPIPSTNDSHSVQVILPQKQLGRRSDMYLFCCSYTHNVAPRGKFIAFVSTEAETDNPQAELKPGIDLLGPVDEIFFEIYDRFEPVNEPSLDNCFI STSYDPTTHFESTVTDVLNMYTMITGKNLDLSVDLSAASAAED

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10008341 [exp]	0	1
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10027094 [exp]	1.0	0.9370
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10017502 [exp]	1.4	0.8273
AT4G22320			unknown protein		Lus10021308 [exp]	3.0	0.8252
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Lus10011751 [exp]	3.2	0.8198
AT5G23340			RNI-like superfamily protein (...		Lus10040998 [exp]	3.5	0.8210
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10036481 [exp]	5.9	0.8077
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Lus10021510 [exp]	8.5	0.8043
AT5G14360			Ubiquitin-like superfamily pro...		Lus10022315 [exp]	9.4	0.7955
AT5G62580			ARM repeat superfamily protein...		Lus10033129 [exp]	10.8	0.7425
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Lus10023674 [exp]	11.6	0.8023

Compare expression of checked genes

Lus10008341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.