Plant FIBer expression Database

Lus10008342 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G26450 152 / 2e-38 WIP1 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027095
[exp]
542 / 0 AT4G26450 118 / 2e-29 unknown protein
Lus10027096
[exp]
439 / 8e-150 AT4G26450 116 / 2e-28 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G472600
[exp]
449 / 3e-148 AT4G26450 328 / 6e-102 unknown protein
Potri.011G169200
[exp]
432 / 7e-142 AT4G26450 323 / 3e-100 unknown protein
PFAM info
Representative CDS sequence
>Lus10008342 pacid=23178456 polypeptide=Lus10008342 locus=Lus10008342.g ID=Lus10008342.BGIv1.0 annot-version=v1.0
ATGCACCACCCTAGGCATCGTAGTCCTGGAAATGGTTACAGGTCTTCTGGTTCCATGGGGATGGGCTTTGGCGGCTCAAGGGTACCCCCAGATGGTGGAG
GTAGGGGTGGTCACGGATTTTACAACTCAGAGTACAGAGGATTTCGGAATAGAGGTTTCGGCCGTGGTCATGGCCAACAAAAGCCTTTTCAACAACAACA
ATCACACCGTTTGCCACCCAGGAAAGAAGATATCATGATGGAAGCTGGTAGACTTGCTGCTGAGTATCTAGTTTCCAAAGGGTTGTTACCTCAGGCTGCA
CTTTCTGGAAAGTGGCAGAATGGTAGTTTGAAGAATCTGGCTGGAGATTATCAAGACTTCAGACAACAAGAGGCCCCAGTTCAGGACAGCCGGGTATCTG
CCCATTCACGCCTAGGTGGTGGTCATTCTGATGCTGGTTCCAGTGAAAGAAGATACAGCGATGAGTTCAATTCTCGAAATCAACCCAGAGGACGGAGAAG
GGGAGAATATTCCCGCAGTTACAGTTCTGAGTTGGTCAGAGACTCTGGGCGGAGTAGCTCTGGGTCGGAGAGAAATAGGGAGTCTCCAGAAGAGGAGGGG
CATGATGATAGTAGCGGGCGTTATGAAGTGCAACAAGGCAGTAAAAGGGCAGAAGACAAAATGCAGGTTTCAGATCGTAATGCCAGCTTAGGACGGGAAA
AAGTGGAGCCAGCTGATGTGGAATCAAGAATCAAGAAATCTGATATCTCGGACGATTTGGGCTCGAAAGCAAGCTTGTCTAGTGTTGCGGAAGAGAAGGC
TGATGGCGAAATCGCTAAGGGGTCTGAAGATCCAGCAGACTTGAATCCTGAGAATAAAGAGCAGGAGGTATTAAATAATGATGAAAGCGAGGAACAAACT
GTTCCTGAGGACTCACTATCCAAACGTTCATTGACGGAGGATGATCTATCAACCAAGAATGGATCTGATTTGTCAGTGTTCTGCAGCTTTGGCAAAGTAC
CAACAAAAACACGGTCTGCACTGACTAGCCGGGTATCAAAGGTTGACCAAGTTTCTAGCAATGGAGGAATTTCATCGGAGACTGGACTGCTCAAGGGTTC
TGATGACTCGACTCAAGATGCATCCTTGAATCCCCTAGTGGCTGTTGGGGGGATCAGCGAAATGAATGATCTAAAAGTATCCCATGATGAACTATCTAAT
GAGTTGCTTATGCAGTCGGTTGAGGATGACAAAGTCGCTCCGATATATGGATCAGAGGGTGGAAAGTGTGTCAGGTCTCACTCGTTTCCAGATGGAGCTT
TTGAGATTGAAAGTGAGTTTGAAACAAGTAATGAGACAGCAACATATGCGAGGTCTAGCTCGGTTAAGGAAAGAGGTGAGAAGCGTCCTGCAGGAAATAG
TGATACTAGTCAAAAACAGAAGAAAGCTAGAGAGAGTCTTTCAACCATAGTTCCTGGGAGTAATACTTCAACAGAAAATATTGTGACCTCAAATGAGGTG
GCTCCTTTGATTCCTGTTACTGAAAATAGTTTGGGGATCAGTTGTGATTTGCCAGAGGATATCACTGGAGCATACGAAGGATATCCTCTACAAAAACATC
ATTCTCCTGGTTCATTCAAGATATGTGACTTAAACCTGATGGGAGTTTCTGATATGCATGACAGTCAGAACAATGAAATAGTTCTTAGGTATCCACCTGC
TGCCAAAAAAGAAGCTATGAATGTTGATGATGACTTGTCGATTCGTAATGCGAAGATGCCTATTGAATATGTTGGACATGTCAGTGGCGGCAAGGAGATT
GAAGTGATTGACTTGGAGAATGATTCCCTTCCAGAGAATGAGGCGGTCGGCAATTCGCAGACAAAGGCCGAGGTTGCATTTAGTGGACCAGAAGGCTTTT
CCAGCAATGTGCAAGCAGGTGGTCAGATAAGTGATGTCCCGGATGAGTATGATGGGCTTACAATCTCGGAGTTCCTCAACAGTTTTTCAAATTGTACATC
GGTAGCTGAAGGGATAAACCCTCTGCAGAATGAAATTGGCCTGCACCATGCGGAGGTGAAAGCTTGTTTACTGGGGAGAGATTTCCAATGCCAGTGA
AA sequence
>Lus10008342 pacid=23178456 polypeptide=Lus10008342 locus=Lus10008342.g ID=Lus10008342.BGIv1.0 annot-version=v1.0
MHHPRHRSPGNGYRSSGSMGMGFGGSRVPPDGGGRGGHGFYNSEYRGFRNRGFGRGHGQQKPFQQQQSHRLPPRKEDIMMEAGRLAAEYLVSKGLLPQAA
LSGKWQNGSLKNLAGDYQDFRQQEAPVQDSRVSAHSRLGGGHSDAGSSERRYSDEFNSRNQPRGRRRGEYSRSYSSELVRDSGRSSSGSERNRESPEEEG
HDDSSGRYEVQQGSKRAEDKMQVSDRNASLGREKVEPADVESRIKKSDISDDLGSKASLSSVAEEKADGEIAKGSEDPADLNPENKEQEVLNNDESEEQT
VPEDSLSKRSLTEDDLSTKNGSDLSVFCSFGKVPTKTRSALTSRVSKVDQVSSNGGISSETGLLKGSDDSTQDASLNPLVAVGGISEMNDLKVSHDELSN
ELLMQSVEDDKVAPIYGSEGGKCVRSHSFPDGAFEIESEFETSNETATYARSSSVKERGEKRPAGNSDTSQKQKKARESLSTIVPGSNTSTENIVTSNEV
APLIPVTENSLGISCDLPEDITGAYEGYPLQKHHSPGSFKICDLNLMGVSDMHDSQNNEIVLRYPPAAKKEAMNVDDDLSIRNAKMPIEYVGHVSGGKEI
EVIDLENDSLPENEAVGNSQTKAEVAFSGPEGFSSNVQAGGQISDVPDEYDGLTISEFLNSFSNCTSVAEGINPLQNEIGLHHAEVKACLLGRDFQCQ

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G26450 WIP1 unknown protein Lus10008342
[exp]
0 1
AT4G26450 WIP1 unknown protein Lus10027096
[exp]
1.0 0.9113
AT3G27700 C3HZnF zinc finger (CCCH-type) family... Lus10014547
[exp]
3.9 0.8666
AT4G39420 unknown protein Lus10006813
[exp]
5.8 0.8790
AT1G26110 DCP5 decapping 5 (.1.2) Lus10017884
[exp]
6.0 0.8404
AT3G19640 MRS2-3, MGT4 magnesium transporter 4 (.1) Lus10025531
[exp]
6.3 0.8621
AT4G34100 RING/U-box superfamily protein... Lus10014076
[exp]
8.4 0.8569
AT2G40070 unknown protein Lus10011374
[exp]
8.9 0.8596
AT4G15240 Protein of unknown function (D... Lus10039693
[exp]
9.5 0.8164
AT1G28420 HD HB-1 homeobox-1 (.1) Lus10015325
[exp]
9.5 0.8573
AT3G02890 RING/FYVE/PHD zinc finger supe... Lus10020350
[exp]
10.7 0.8614

Lus10008342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.