Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56240 163 / 2e-40 unknown protein AT5G56250 128 / 1e-29 HAP8 hapless 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000240 [exp] 1521 / 0 AT5G56240 121 / 9e-28 unknown protein Lus10027098 [exp] 704 / 0 AT5G56250 172 / 4e-46 hapless 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G169100 [exp] 703 / 0 AT5G56250 177 / 2e-45 hapless 8 (.1.2) Potri.001G472400 [exp] 680 / 0 AT5G56250 203 / 8e-54 hapless 8 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008344 pacid=23178464 polypeptide=Lus10008344 locus=Lus10008344.g ID=Lus10008344.BGIv1.0 annot-version=v1.0 ATGTTATTATCCATTGAAAACCCTCCACCAGATCCCACTACTCATCATGTCTCTTCTTCCCAGTTTTCCCCTTCTGCTTCTCATGATCTGACGACCCCCA CAACCACAACAACTCCCTCTTCTCCTTCTTCCTCTTCCACTTCTCTTCCTTCAAAGCCTTTGCTGCCATCTCCTGAGCTACTACAGCCAGATCTACCAAA CCCAGATCATCAAAACCCACTTCCCAGTTTCTCCATAAGAGATTATGTGTTCACAGCTCGAAGCAAGAACATCAAAACGAATTGGCCGTTCTCTTCGAAA AGCTTGCAACTTTGTTTGAAACATGGTGTGAAAGATGTGCTACCACCGTTTCAGTCTCTTGGTGTTGTGAGAAAACAAGGTTTTGGCAGATGTGCGGTTG GCTCTACTGTAGTTAATCAAAAGAAAAAGTCGCATAAGCTTGTCAACAAGCTCAGCAAGTCTGCTGAGAATGGTGGGGTGATAGAATCAGCAGCGGATGA TATTCCCTCGAGTACTGTTAATTTAGTAGAAAACCGAGTAAACATAAGTTCATGTGGATTTGGAGGAGATGATTTCCCATCCACAACAACTAGTGTATCT CAATCTGATATAGACTCAGTGCCTAAGTACTTCCGGTCGAACTTGGTACCAGAAACCGAGACATCAGTGAAAGCCTTAGCCGGAGTTGGTGCTGGTAGAG GACCTTCTTTGACGCACAAGACTGAGAGCGCCTCTCGGCAACCAAACAAGAAGTGTAAGTTGATAGTAAAATTTGGTGGCAACTCTGGTCGTAGCTCGGT AGAAGATATTGCTTCAACAAGTACACCTATATCAGAATCAATGACTTCGAAAGTTTGCCCAGTCTGCAAAACGTTTTCTTCCTCATCGAACACCACTCTA AATGCTCACATTGATCAATGCCTTGCTGTGGAGACGACACCTAAATGGACAGAAGACTCGAAGGCAACTAAATCTAAAGTAAAGCCAAGGAGAATAAGGT TGATGCTGGACATATATAAGACAGCTCCTCGGTGCACATTGGAAGAGCTTGACCGACGAAACGGTAGAACTTGGGCTACTGATTCAAGCTTGCCAATGGA GGAGACTGATAGGACATCTAATAAGGAAGGTAAAAGGGAGAAGGTGACACAAGTTGCTGCTGAGAAGCATGTAAATGCTGGTGATGTTGGCCCGGTTTAT ATTGATGCAAATGGCACCAAGGTTAGGATTTTATCAAAGTCAACCGACATTATTACTCCAGTGGCTAAAGTAGGGGAGGGTGGTGGAGGGAAGAAACTGC TGAAAGGAGGCACAAGAAGCAAATACATGGCTATGAAGAAGAGAAAACACAAGCACAAGAAATATCTGAAGCTTGCTGCACAAAGCAAAAAGCTTTTCTC GCAAAAGACTCGTGGTTCGGAGCTTCGTGGAAATCATGAACGAGCTGTTGATGCTGGGAAAGTTTCTGAGAAAGAGCTTACATCTCGACAAATTACACCA GGTAATTCTGGGAACCTGAGACCATGGGTGTGTTCTAAGCCAAGAGGTTCTCCAAAAAAGATTAATAACCCAGAGGGCCAGCAGCCTGTAAGATGCCCAT GGCCTTTGCCTCATAGCCTGTTGGGGGAATCTGATCAGTCATTTTTGGGGGATTCTAGTGAAGAGAGCACTGGTATTCAGAGATTTACGAATCTCTCAGA GAATCTGACTTCTCCTGGAAGCTGCCATGAGAAGCAATCCTCTCCTGTCAGAAGGAAACGAGGGAGACCATTGTCACGGCCTGTTGTTAGTAATGATGTG GGGAAGTCTTTCAATATAGTGAAGCAAAATGTCCTTCAGTTAAATAGGGATCGCTTGTTGAGGCCTCCAAATGCTAGCAAGAATCAGATGGACTCATTGG ATAAGCAGACAATTGGTCGTCACAAAACTGCAACTGATTATAAGTCTGGTCATCTGCGGAACACTGAAGCTCCTTGCAGCTCTCAAGCAACTTTGAGTAA AGCAATAAGTTTCCCTTCGTACCAGAGAAGAGAGTTGTCTGTTAGCAATCGATCTAGCAAGATTGTTAAGAAAGGTTCAAACTGGAAGGAGGGTCGAGTG CATGTGATTGATGAAAGAGAAGATGAGTTAGCAGCCAACTGTGAGGTTGATCAACAAGATGATTTGATGCACAATCACAGAGGAGGCAATCAGCCTGAAA GTGATGCAATAAGTGAAGAACTTCCTTGTGATGGGAATGATACTATGGAACCTAGAAAGATAAAAGGTACGCTATGTAACTCGCAAGGGAAGGAAAGTTT CTTGGAGTCTGTATCGCATTCTTATGACTGTCTTGATGAGGTGAACATTGCTCCTTCTGGTTTAGAAAATGCTGATTGTCTACTTGAAGAAGATGGTCTT AACTCCAGCCGAGAATTAAGGCAAGGTGCTAGTTTGAGTAACTCCATGGACACTGCAATTTACACAGTGAAAGATGCTTCAGATCCCAAGTCTGCTACTT TCCGATCTGTCGCAAATTACAGAGGTCTTTTAAGTGGATCTGAATCACCGACGGATTCTGCTGGGCCAGATTTTGTGAATGACCATGAAATGTTTTCTGC TGATGGCATTAGTAATGGGATGATCGGCCAAAGAAGCGAAATAGGTGCAGAATTAGATTCCGAAGCTGCTGCACATGAAGATTCCTTCCCTGAGATTGAT CCAATTCCTATTCCAGGACCCCCTGGGTCATTCTTGCCCAGTCCAAGAGACATGGGATCAGAAGATTTTCATGGTAATTCATCAGTGACCACCAGCCGAG CTCAGTCCTCCTTGGATATGGGTAATGTTGTTGATAAAGATTCCTCTAATTCCCCAATATCTGCTGCATCAAGCATCTCCAACTCAACTGCACATGGATG TGGCTTTGATTCAGCATCATCAGCAATTCTACCACCTAATGTTGTTGAAAGCACGGCATCAGGAGTGGCTATTTTTGCAAGCGTTGATGGAGGGGTTCCA TCAGCAATGACCGAAATGGACAAGCCAAGTTTCGAGGAACAACATACGAGTCTTAATAAAATCCGTCTCGAAAAGGGGTCCTTTGCTGTCAGGAATGATC AGCCATGCTGTTGCCAAAGGAAGGAGAGTAGACTTGGTCCTGATTTTGTTCTGAACCAACAAGATTCTTTGCTGCTTCGACGACGGAAGATGGCTTCTTC AATGGCAGATCCTCCGAATGATAAACAAAATGATCACAGTTCAAACCCTTTGGACGTGGGAGCTTATTTTGCTTCGTCTCCAAGCCCTTGTCCAACTTCA GGCGCTGAAAGTGCGGGATTCTCAGTCATTAAGCCTCAAGTAGTTCCCTTATACGATCCTCCGAATGCTGGAGTGAGGGTTTTAGCAGGTATGTATTGCG AGTCTAGTAGTAGTCCATCTACTTCTAATCCAGTACTTCGGTTGATGGGGAAGAACTTGATGGTAGTCAACAAGGACGAAGATTCTTCTAAGCCATTGTT ACATCCTCTGAATAATTCTCAAACCCCTCATTTTGCAACGTTCACCGCAATTTCTCCTGGAAATATTCAGAATCAGGAATCTCAAGCTTTCCAGCATATG GTTCCTGTACATTTTGGTGGCAACTCGCATACAGTTAGCCCTTACTTTAATGCTGGGTTGGCTAATCCTACCAGTTATGTAAATTCGAAGTTTCCGCAAC CGCAAATTCAAATGTTTCGAACCCGTGGCAGTGATGAGGGCTTCCCAGTGCCCATGGAGCCTACTTACCAGTTGAAAGATCCATCCTCGCGCTGTGCAAA GGAGATCATTGTAATTGACGATGCTCCGGAGAGGGAAATTGTCGTCACCAATAAGGCTGTAAACTATTACAAAGGTGATAGACCGAATGATCATGTGATA TCATCCGGCATCTTCCTGCAAGGCGTCCCGAGTTATAATCACCAGAACCACGTGCATATTCCCAGTGCTTGTTACCCTCCGTTGCAAGATCACAGCAACC TTCAGTCGGTACCTCCTACGAGGCTACCGAATGCGACTAATAATGTGCGGTGGCCAGGTCCCGGAATGTTGAATCAAAGTCCGTTACCTGCTGCATCGTC GGCCTCTAGCAGTGTTGTACACTCTTCGTTGTACTATTCTCCGAGCTTTTCGTAA
AA sequence Show only first row Show all	>Lus10008344 pacid=23178464 polypeptide=Lus10008344 locus=Lus10008344.g ID=Lus10008344.BGIv1.0 annot-version=v1.0 MLLSIENPPPDPTTHHVSSSQFSPSASHDLTTPTTTTTPSSPSSSSTSLPSKPLLPSPELLQPDLPNPDHQNPLPSFSIRDYVFTARSKNIKTNWPFSSK SLQLCLKHGVKDVLPPFQSLGVVRKQGFGRCAVGSTVVNQKKKSHKLVNKLSKSAENGGVIESAADDIPSSTVNLVENRVNISSCGFGGDDFPSTTTSVS QSDIDSVPKYFRSNLVPETETSVKALAGVGAGRGPSLTHKTESASRQPNKKCKLIVKFGGNSGRSSVEDIASTSTPISESMTSKVCPVCKTFSSSSNTTL NAHIDQCLAVETTPKWTEDSKATKSKVKPRRIRLMLDIYKTAPRCTLEELDRRNGRTWATDSSLPMEETDRTSNKEGKREKVTQVAAEKHVNAGDVGPVY IDANGTKVRILSKSTDIITPVAKVGEGGGGKKLLKGGTRSKYMAMKKRKHKHKKYLKLAAQSKKLFSQKTRGSELRGNHERAVDAGKVSEKELTSRQITP GNSGNLRPWVCSKPRGSPKKINNPEGQQPVRCPWPLPHSLLGESDQSFLGDSSEESTGIQRFTNLSENLTSPGSCHEKQSSPVRRKRGRPLSRPVVSNDV GKSFNIVKQNVLQLNRDRLLRPPNASKNQMDSLDKQTIGRHKTATDYKSGHLRNTEAPCSSQATLSKAISFPSYQRRELSVSNRSSKIVKKGSNWKEGRV HVIDEREDELAANCEVDQQDDLMHNHRGGNQPESDAISEELPCDGNDTMEPRKIKGTLCNSQGKESFLESVSHSYDCLDEVNIAPSGLENADCLLEEDGL NSSRELRQGASLSNSMDTAIYTVKDASDPKSATFRSVANYRGLLSGSESPTDSAGPDFVNDHEMFSADGISNGMIGQRSEIGAELDSEAAAHEDSFPEID PIPIPGPPGSFLPSPRDMGSEDFHGNSSVTTSRAQSSLDMGNVVDKDSSNSPISAASSISNSTAHGCGFDSASSAILPPNVVESTASGVAIFASVDGGVP SAMTEMDKPSFEEQHTSLNKIRLEKGSFAVRNDQPCCCQRKESRLGPDFVLNQQDSLLLRRRKMASSMADPPNDKQNDHSSNPLDVGAYFASSPSPCPTS GAESAGFSVIKPQVVPLYDPPNAGVRVLAGMYCESSSSPSTSNPVLRLMGKNLMVVNKDEDSSKPLLHPLNNSQTPHFATFTAISPGNIQNQESQAFQHM VPVHFGGNSHTVSPYFNAGLANPTSYVNSKFPQPQIQMFRTRGSDEGFPVPMEPTYQLKDPSSRCAKEIIVIDDAPEREIVVTNKAVNYYKGDRPNDHVI SSGIFLQGVPSYNHQNHVHIPSACYPPLQDHSNLQSVPPTRLPNATNNVRWPGPGMLNQSPLPAASSASSSVVHSSLYYSPSFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56240			unknown protein		Lus10008344 [exp]	0	1
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10018960 [exp]	2.0	0.8663
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	2.2	0.8708
AT1G15130			Endosomal targeting BRO1-like ...		Lus10034634 [exp]	6.5	0.8402
AT4G35830		ACO1	aconitase 1 (.1.2)		Lus10041858 [exp]	6.9	0.7909
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10016079 [exp]	8.1	0.8021
AT4G35830		ACO1	aconitase 1 (.1.2)		Lus10028405 [exp]	9.2	0.7859
AT1G22870			Protein kinase family protein ...		Lus10030346 [exp]	9.5	0.8002
AT4G04920		AtSFR6, SFR6	sensitive to freezing 6 (.1.2)		Lus10018482 [exp]	9.6	0.7360
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10041880 [exp]	13.4	0.7903
AT5G53480			ARM repeat superfamily protein...		Lus10008863 [exp]	18.9	0.8122

Compare expression of checked genes

Lus10008344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.