Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13230 373 / 4e-133 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027099 [exp] 448 / 9e-161 AT3G13230 373 / 6e-131 RNA-binding KH domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G166000 [exp] 388 / 4e-139 AT3G13230 368 / 2e-131 RNA-binding KH domain-containing protein (.1) Potri.001G469200 [exp] 383 / 5e-137 AT3G13230 367 / 1e-130 RNA-binding KH domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10008345 pacid=23178489 polypeptide=Lus10008345 locus=Lus10008345.g ID=Lus10008345.BGIv1.0 annot-version=v1.0 ATGCAGTCTGATTCAATGGAAATCGAAACCCTAACAAACGGAGGGGCTGAGACTTCTTTGCCTGCAAAACCTCTGTTCGAGCCACTGAAGGCTCACGAGA TGTCCGACGGGAAGGTACAGTTCAGGAAGGTCTCAGTTCCGCCTCACCGATACACTCCATTGAAGAAGGCATGGCTGGATATATACACTCCAGTGTACGA TCAGATGAAAGTAGACATCCGTATGAACCTCAAAGCCAGAAAGGTTGAGTTGAAAACCCGAGCCGACACTCCTGACATTAGTAACCTGCAAAAGTCTGCT GATTTCGTCCAGGCATTCATGTTTGGGTTCGACGTCATAGATGCCGTGGCACTGCTTCGAATGGACGAGCTGTACGTGGACACTTTCGAGATCAAGGACG TGAAAACTCTCCACGGGGAGCATCTATCTCGGGCGATCGGTAGGCTGTCGGGGAAAGGAGGGAAGACCAAGTTTGCAATTGAGAACGCTACTAAGACTAG GATTGTGATTGCTGATAAGAAGATTCACGTGTTAGGGTCGTTTCAGAACATTAAAGTAGCTAGGGATTCTCTTTGCAGTCTCATTTTGGGTTCCCCTGCT GGTAAGGTTTACTCCAAACTCAGGCAGGTTTCTGCCAGATTAGCAGAGAGGTTTTGA
AA sequence Show only first row Show all	>Lus10008345 pacid=23178489 polypeptide=Lus10008345 locus=Lus10008345.g ID=Lus10008345.BGIv1.0 annot-version=v1.0 MQSDSMEIETLTNGGAETSLPAKPLFEPLKAHEMSDGKVQFRKVSVPPHRYTPLKKAWLDIYTPVYDQMKVDIRMNLKARKVELKTRADTPDISNLQKSA DFVQAFMFGFDVIDAVALLRMDELYVDTFEIKDVKTLHGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADKKIHVLGSFQNIKVARDSLCSLILGSPA GKVYSKLRQVSARLAERF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13230			RNA-binding KH domain-containi...		Lus10008345 [exp]	0	1
AT3G13230			RNA-binding KH domain-containi...		Lus10027099 [exp]	1.7	0.8236
AT4G01100		ADNT1	adenine nucleotide transporter...		Lus10033947 [exp]	2.6	0.7776
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10014802 [exp]	2.8	0.7988
AT2G03820			nonsense-mediated mRNA decay N...		Lus10023975 [exp]	3.5	0.7905
AT1G18850			unknown protein		Lus10024247 [exp]	3.9	0.7803
AT1G18850			unknown protein		Lus10023616 [exp]	6.0	0.7783
AT1G55880			Pyridoxal-5'-phosphate-depende...		Lus10043164 [exp]	6.6	0.6985
AT2G18110			Translation elongation factor...		Lus10017261 [exp]	7.7	0.7574
AT1G07920			GTP binding Elongation factor ...		Lus10019918 [exp]	8.0	0.7763
AT2G18110			Translation elongation factor...		Lus10013555 [exp]	11.2	0.7594

Compare expression of checked genes

Lus10008345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.