Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025489 [exp] 62 / 2e-13 ND 53 / 2e-13 Lus10009488 [exp] 65 / 7e-13 AT1G33980 167 / 5e-47 Smg-4/UPF3 family protein (.1.2) Lus10027007 [exp] 47 / 2e-07 ND 41 / 8e-06 Lus10003510 [exp] 42 / 0.0001 AT1G33980 200 / 9e-61 Smg-4/UPF3 family protein (.1.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008346 pacid=23178467 polypeptide=Lus10008346 locus=Lus10008346.g ID=Lus10008346.BGIv1.0 annot-version=v1.0 ATGGTGATTGTGATTGTTGAGCCGCGAAGAAGGAGGAGGACAGTAATTAAAACAAAAAGGGTTAATTATTCCGGTTGGGTTATAGACAGTGGTTCGACCC GTGAAAAACAGGGAGCTAGAACTTTACTGCCGGAAACTTTGAGAGCTTTGGAAATCATAAGAAGGAAGCTTACGAGTTACGAGAGAACCAAAGTGGTGGT CAGGCATTTTCCTCCTTCAGTTTACTCTCTCGTTCAGAGCTATTCTCTCACTTGGATCATCTCTTCTCCGACCGGGTCAATTGTGTCTCTTTCCGACCCG GGAATTTCAGAGGGTTCGAAAGACGGCATCGTTGTTACGCCACTAATGGATTTTATATGCAAGAAACGAACAGGAGAGACAAGAACCCAGGTTGACATTT TGAAGGTCCGCCCAAAGAAGCCAAGTTGGAAAGACAAAGCTCTTGTCGATGAAGCATAA
AA sequence Show only first row Show all	>Lus10008346 pacid=23178467 polypeptide=Lus10008346 locus=Lus10008346.g ID=Lus10008346.BGIv1.0 annot-version=v1.0 MVIVIVEPRRRRRTVIKTKRVNYSGWVIDSGSTREKQGARTLLPETLRALEIIRRKLTSYERTKVVVRHFPPSVYSLVQSYSLTWIISSPTGSIVSLSDP GISEGSKDGIVVTPLMDFICKKRTGETRTQVDILKVRPKKPSWKDKALVDEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008346 [exp]	0	1
AT5G25530			DNAJ heat shock family protein...		Lus10041254 [exp]	4.2	0.6043
AT1G52540			Protein kinase superfamily pro...		Lus10001323 [exp]	10.3	0.5957
					Lus10032002 [exp]	22.0	0.5709
AT3G09110			Protein of unknown function (D...		Lus10003163 [exp]	23.0	0.5575
AT3G54500			unknown protein		Lus10039553 [exp]	24.2	0.5743
AT4G26120			Ankyrin repeat family protein ...		Lus10024842 [exp]	28.6	0.5540
AT1G47710			Serine protease inhibitor (SER...		Lus10040926 [exp]	33.8	0.5489
					Lus10017831 [exp]	35.2	0.5421
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10006160 [exp]	44.5	0.5446
AT3G54500			unknown protein		Lus10024170 [exp]	47.4	0.5410

Compare expression of checked genes

Lus10008346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.