Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71490 91 / 2e-21 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G22830 69 / 1e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G17630 64 / 4e-12 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G22070 64 / 6e-12 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G11290 63 / 7e-12 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26540 62 / 1e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 62 / 2e-11 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G56690 62 / 3e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G06150 62 / 3e-11 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G42920 61 / 7e-11 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009487 [exp] 131 / 2e-35 AT1G71490 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027008 [exp] 94 / 1e-22 AT1G71490 335 / 7e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000043 [exp] 72 / 7e-16 AT1G71490 253 / 1e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025488 [exp] 70 / 6e-15 AT1G71490 106 / 9e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 70 / 4e-14 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013149 [exp] 69 / 1e-13 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003508 [exp] 67 / 3e-13 AT1G71490 415 / 5e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031028 [exp] 66 / 9e-13 AT4G19191 727 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 65 / 3e-12 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G074700 [exp] 102 / 2e-25 AT1G71490 878 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G006400 [exp] 69 / 1e-13 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G243800 [exp] 68 / 1e-13 AT5G59600 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G043400 [exp] 67 / 2e-13 AT2G33760 775 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G211400 [exp] 67 / 4e-13 AT3G11460 772 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G089400 [exp] 66 / 9e-13 AT1G33350 639 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G083700 [exp] 66 / 1e-12 AT3G22690 1050 / 0.0 unknown protein Potri.004G111300 [exp] 65 / 2e-12 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 65 / 2e-12 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G108000 [exp] 64 / 3e-12 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10008347 pacid=23178448 polypeptide=Lus10008347 locus=Lus10008347.g ID=Lus10008347.BGIv1.0 annot-version=v1.0 ATGCCGGATAGGGATGTTGTGTCTTGGAATTCAAGTATTGGTGGTTATGCTTCAAAGGGAATGTGGAAGGAAGCTATTGAGCTGGTCGAAAGAATGCAAT TAGAAGTTGGTGTCCTAGACTTGCTCTCTAAAATGAGGAAGTCTGATGTTCAGTTGGATTCAGTAGCAATCATTAGTGGTTTAAGTGCATGTTCCCATAT TGGAGCCTGGAAATTAGGAGCTGAGCTACATGGTTTTGCAATTCGAAATAATTATGATGGATTGGTTGATCCATTCCAGTCTAGTATTCGAAGGGGGAAT GTTGTTTTGAAAACTGTTGAGTTTCTACAACATCATTCCTCAAATAGAACACTATGCTTGCATGGTGGATCTCTTCGGGAGGGCAGAGATGTTAGATCGA GCAAAGGAGACGGTATTAAATATGCCTTACAGTCCGACGCCTGCAATTTGGAACCTCTCTTAAGAGCTTGCCAGACTCATGAAAATGCAGATATATGGGA ATGGGCAGTTACGCGTTTGCTAGAGATGAAACCGGAAAATTTGGGGTCTTAA
AA sequence Show only first row Show all	>Lus10008347 pacid=23178448 polypeptide=Lus10008347 locus=Lus10008347.g ID=Lus10008347.BGIv1.0 annot-version=v1.0 MPDRDVVSWNSSIGGYASKGMWKEAIELVERMQLEVGVLDLLSKMRKSDVQLDSVAIISGLSACSHIGAWKLGAELHGFAIRNNYDGLVDPFQSSIRRGN VVLKTVEFLQHHSSNRTLCLHGGSLREGRDVRSSKGDGIKYALQSDACNLEPLLRACQTHENADIWEWAVTRLLEMKPENLGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71490			Tetratricopeptide repeat (TPR)...		Lus10008347 [exp]	0	1
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10026623 [exp]	10.8	0.6695
AT2G23660	AS2	LBD10	LOB domain-containing protein ...		Lus10009337 [exp]	13.8	0.5421
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10034376 [exp]	16.6	0.6308
AT3G02125			unknown protein		Lus10013196 [exp]	33.6	0.6050
AT3G24850	B3		Domain of unknown function (DU...		Lus10038802 [exp]	36.7	0.5816
AT1G78160		APUM7	pumilio 7 (.1)		Lus10036469 [exp]	43.0	0.5770
					Lus10005955 [exp]	45.8	0.5895
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10036893 [exp]	52.8	0.5733
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10017984 [exp]	58.0	0.5497
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10027161 [exp]	97.0	0.5128

Compare expression of checked genes

Lus10008347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.