Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55760 516 / 0 BTB/POZ domain-containing protein (.1) AT1G21780 366 / 4e-127 BTB/POZ domain-containing protein (.1.2) AT3G56230 72 / 4e-14 BTB/POZ domain-containing protein (.1) AT1G01640 69 / 1e-13 BTB/POZ domain-containing protein (.1.2) AT3G03740 69 / 6e-13 ATBPM4 BTB-POZ and MATH domain 4 (.1) AT2G39760 68 / 1e-12 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2) AT2G40450 66 / 2e-12 BTB/POZ domain-containing protein (.1) AT5G19000 63 / 9e-11 ATBPM1 BTB-POZ and MATH domain 1 (.1.2) AT4G04090 59 / 3e-10 BTB/POZ domain-containing protein (.1) AT5G48510 59 / 3e-10 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027101 [exp] 538 / 0 AT1G55760 389 / 3e-136 BTB/POZ domain-containing protein (.1) Lus10042717 [exp] 384 / 4e-133 AT1G21780 557 / 0.0 BTB/POZ domain-containing protein (.1.2) Lus10029677 [exp] 370 / 2e-125 AT1G21780 538 / 0.0 BTB/POZ domain-containing protein (.1.2) Lus10041235 [exp] 67 / 1e-12 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10021946 [exp] 68 / 2e-12 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Lus10042763 [exp] 62 / 7e-11 AT4G08455 354 / 1e-124 BTB/POZ domain-containing protein (.1) Lus10004701 [exp] 62 / 2e-10 AT2G39760 598 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2) Lus10003365 [exp] 62 / 2e-10 AT3G03740 601 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10008421 [exp] 62 / 2e-10 AT3G03740 599 / 0.0 BTB-POZ and MATH domain 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G468700 [exp] 578 / 0 AT1G55760 522 / 0.0 BTB/POZ domain-containing protein (.1) Potri.005G178400 [exp] 370 / 1e-128 AT1G21780 543 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.002G082800 [exp] 365 / 3e-126 AT1G21780 535 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.013G083800 [exp] 74 / 6e-15 AT3G56230 305 / 2e-104 BTB/POZ domain-containing protein (.1) Potri.010G029500 [exp] 68 / 1e-12 AT3G06190 580 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.008G200700 [exp] 64 / 3e-11 AT3G06190 582 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.005G183600 [exp] 61 / 3e-10 AT4G08455 342 / 2e-119 BTB/POZ domain-containing protein (.1) Potri.002G077000 [exp] 60 / 4e-10 AT4G08455 369 / 2e-130 BTB/POZ domain-containing protein (.1) Potri.017G009700 [exp] 60 / 7e-10 AT1G05690 451 / 9e-159 BTB and TAZ domain protein 3 (.1) Potri.004G194200 [exp] 60 / 9e-10 AT3G03740 573 / 0.0 BTB-POZ and MATH domain 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10008348 pacid=23178459 polypeptide=Lus10008348 locus=Lus10008348.g ID=Lus10008348.BGIv1.0 annot-version=v1.0 ATGAACAACGATTCCGCTTACAGAGTTGAAACCACTTCACGCCTCGCCCAATGGCGGATCGACAACCTCGCCTCTTGCTCCTACCGCAAATCCGACCCTT TCAAGATCGGCAACTGGAATTGGCATTTGACAGTGGAGAAGAACAGGGTGTTGTTTGTTAAATTGTACCCAGAGGTCTCCAATCTTACAAGGGAAAATCC TCCCATTGCATCCTTTGTTATTCGGGTTGTTTGCTCCGTCGGGAATCGCAAGTCCTTGATTCATCCTGAAATCACAGACAGGCAACTGAAGAACAACGAC GATTTCGTTTGGGCGATTGAGGTCCCATTGACGGGGAAATTCATCATCGACGTCGAATTTCTTGACCTCAAGTCTGCATCACCCGACGGAGGAGAGCCAT GCTCCATATGGGGAGGAGGAGCGACCGAGAAGCGATCGAGTGAAACAGCACTCGCATCCCTAGGAAGAATGTTGACACAAAGCATCCACACAGACATAAC CATCAACGCTTCAGACGGAAGCAGCATCGGAGCACACCGCGCACTCTTGGCTGCAAGATCGCCCGTATTCTGCAGCATGTTTGCACACGACCTCAAGGAG AAAGAGCTCTCCACAATCGAAATCTCCGACATGTCGATCGAGGCTTGCCAGGCCTTCCTCAACTACATATACGGTAACATCCAGCACCACGAGTTCATTG CTCACAGGCTCGCGCTTCTCCATGCTGCCGATAAGTACGACATATCCGACCTGAAGGAAGCGTGCCACGAGAGTCTGCTGGAAGATATAGACGCGAAGAA CGTCCTCGAGAGGCTTCAGAGCGCTTCGCTGTACCAGCTTCCCAGGCTGAAGGCCAGCTGCATGCGGTATCTCGTGAAGTTTGGTAAGATTTACGAGATT CGAGATGATTTCAACGTGTTCATGCAGTCTGCTGATAGGGAATTGGTTGCTGAAGTGTTCCATGAAGTGTTGAATGCATGGAAAGGGTTTTAA
AA sequence Show only first row Show all	>Lus10008348 pacid=23178459 polypeptide=Lus10008348 locus=Lus10008348.g ID=Lus10008348.BGIv1.0 annot-version=v1.0 MNNDSAYRVETTSRLAQWRIDNLASCSYRKSDPFKIGNWNWHLTVEKNRVLFVKLYPEVSNLTRENPPIASFVIRVVCSVGNRKSLIHPEITDRQLKNND DFVWAIEVPLTGKFIIDVEFLDLKSASPDGGEPCSIWGGGATEKRSSETALASLGRMLTQSIHTDITINASDGSSIGAHRALLAARSPVFCSMFAHDLKE KELSTIEISDMSIEACQAFLNYIYGNIQHHEFIAHRLALLHAADKYDISDLKEACHESLLEDIDAKNVLERLQSASLYQLPRLKASCMRYLVKFGKIYEI RDDFNVFMQSADRELVAEVFHEVLNAWKGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55760			BTB/POZ domain-containing prot...		Lus10008348 [exp]	0	1
AT1G55760			BTB/POZ domain-containing prot...		Lus10027101 [exp]	2.0	0.8464
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10019543 [exp]	2.4	0.8278
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10029873 [exp]	4.0	0.7979
AT3G09850			D111/G-patch domain-containing...		Lus10036327 [exp]	4.9	0.8279
AT1G68185			Ubiquitin-like superfamily pro...		Lus10034627 [exp]	5.5	0.7927
AT5G38900			Thioredoxin superfamily protei...		Lus10005083 [exp]	5.9	0.8041
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10032750 [exp]	6.3	0.8058
AT1G02270			Calcium-binding endonuclease/e...		Lus10030173 [exp]	8.9	0.7655
AT1G08930		ERD6	EARLY RESPONSE TO DEHYDRATION ...		Lus10033812 [exp]	10.8	0.7841
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10000184 [exp]	12.0	0.7586

Compare expression of checked genes

Lus10008348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.