Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59670 251 / 5e-77 unknown protein AT4G37440 111 / 4e-26 unknown protein AT3G50040 89 / 1e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027104 [exp] 669 / 0 AT3G59670 244 / 1e-75 unknown protein Lus10027105 [exp] 123 / 8e-34 ND 37 / 0.001 Lus10001409 [exp] 125 / 6e-31 AT4G37440 155 / 2e-42 unknown protein Lus10014864 [exp] 119 / 2e-28 AT4G37440 155 / 2e-42 unknown protein Lus10011519 [exp] 94 / 2e-20 AT4G37440 134 / 8e-35 unknown protein Lus10019305 [exp] 63 / 1e-10 AT4G37440 83 / 4e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G127100 [exp] 392 / 5e-131 AT3G59670 377 / 2e-125 unknown protein Potri.005G144800 [exp] 177 / 1e-49 AT3G59670 181 / 6e-51 unknown protein Potri.007G051100 [exp] 162 / 4e-44 AT3G59670 178 / 4e-50 unknown protein Potri.019G112201 [exp] 101 / 3e-25 AT3G59670 98 / 7e-25 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008349 pacid=23178453 polypeptide=Lus10008349 locus=Lus10008349.g ID=Lus10008349.BGIv1.0 annot-version=v1.0 ATGATGTTGGTCAAGGTAAAACCAGAGGCAAAATTGGAAGTTTCCAACAACCAAGATGCAGCAGCGCCAGTACCAGCAGCAGTGATGGGCGGCAAGAGCA TCAGGATTACAGATGGTGAATTCAAGCCTTTGAAGAAAGGCATTGCGGTTCTGGACGATCCAGAAGCAGTTTTGGTAGATGTGGTGACGCTTACAGCAAC CATTCAGCAGCAGGATCATCATCTTCCTACTACTGACTTGGATGCAACTGAGCACTCCAGCTCTTTCGCCGACACGCTCTCCGACACCGACGAGAGATGC TTGTTGGGGAACAGCGAAGAAGGCGGCGGCGGAGAGGTTGAGTCTGAGTTCTTTGGTGGAGATGGGGATATTGATTCCCCCTTTGATGCTTTCAGCAGCT TGTTCTACTCCAGGAAGAAAAAGGTAACGAATCATTGGAGGAGCTTTATAAGGCCTCTCATGTGGCGTTGCAAGTGGGCAGAGCTTAAAATCAAGGAGAT CGAGTCTCAAGCACTCAAGTATTCTGGTGAACTTACAGCTTGTGAACACAGAAAACAGGCATCAACCTATCAGTCCATCCCTGATGGCTTCTGTTCCAAG TCTCTCCCATTTTTTAATGACTACTATTATAGCAGAAAGTCTAAAAGGAGGCGAAGAAGAAAGAGGGCCGAGGAAGCTGTGAATATATCGTCGATTATGT CCGATCATCCCCTTTTTTCTTATCTCGAAAGCAAGAAGTCTATTACGGATGGAGCCTCCTTGGTCGATGACTTTGAACCAATAGTATTAACAGACACAAG GCCTGAAGGGAAAGACAAATTTGGCGATTCTAACGACGAGTTGCCATTTGCTTTTGGGAACACTGATAACTACTACCTGGAGAACATGTTGTTAAACATT GAAGCGACGCACTCTCGAGTGCACAAGCTAAAGGATCAACTCGACGCGGTGATATCAAACAATGCCTCCAGATTCTCTTCCTGGGATAATCTGTGCCTTC TGGCAGCACCTTGTGATGAAGGACAGACTAGTTCAGCTCCAAGTCCCGTCTTATCGGTAGGGTATGGTGGGGAAACACTAGCTCACCATACCTCTGGATA CGATATGAGTGACCTGGCCTTGCCCGAGAGTGCCATGTCAAGTTTCGGAGAGGCCATCCATGTACCCGATATCATCGAAAGCACAGTGGGACTGCTGTCA GCAGCTGATGTTACGTTCCATGAGCAGCAGCCTATGGGGAAGCAGTCGTGCGAAGATATGTCGGAGAATGTTGTAATAAAGAATGAAGCAGCGGATGGTG AGAAAGAAGCTGTGATGGTGGGGGCAAGTTGCAATAAAGTGGCAGAGGAGGAGCATCATGAGAAAGGGGAGACAGGGGAAAGCAAAGATGCCAGTAAAGT TGCAAACTTTAAGACAGAGGAAGTGGAAACAACAGCAACAACAACAGCGGCAGGAGCAGGGGAATCGAGTAATCTGAAATCATGTTTAGCACTAGATATG CAGATCCCAACAAACAAGAGGAAGAGAGGGGAACGTAAAGCTGGTTCTGGGACTGGAGGATGGAAGAAGAAATGTTCAGGTGACGATGATGATGATAATC CTTAG
AA sequence Show only first row Show all	>Lus10008349 pacid=23178453 polypeptide=Lus10008349 locus=Lus10008349.g ID=Lus10008349.BGIv1.0 annot-version=v1.0 MMLVKVKPEAKLEVSNNQDAAAPVPAAVMGGKSIRITDGEFKPLKKGIAVLDDPEAVLVDVVTLTATIQQQDHHLPTTDLDATEHSSSFADTLSDTDERC LLGNSEEGGGGEVESEFFGGDGDIDSPFDAFSSLFYSRKKKVTNHWRSFIRPLMWRCKWAELKIKEIESQALKYSGELTACEHRKQASTYQSIPDGFCSK SLPFFNDYYYSRKSKRRRRRKRAEEAVNISSIMSDHPLFSYLESKKSITDGASLVDDFEPIVLTDTRPEGKDKFGDSNDELPFAFGNTDNYYLENMLLNI EATHSRVHKLKDQLDAVISNNASRFSSWDNLCLLAAPCDEGQTSSAPSPVLSVGYGGETLAHHTSGYDMSDLALPESAMSSFGEAIHVPDIIESTVGLLS AADVTFHEQQPMGKQSCEDMSENVVIKNEAADGEKEAVMVGASCNKVAEEEHHEKGETGESKDASKVANFKTEEVETTATTTAAGAGESSNLKSCLALDM QIPTNKRKRGERKAGSGTGGWKKKCSGDDDDDNP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59670			unknown protein		Lus10008349 [exp]	0	1
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10021096 [exp]	2.4	0.9437
AT1G04870		PRMT10, ATPRMT1...	protein arginine methyltransfe...		Lus10019439 [exp]	3.5	0.9371
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10027818 [exp]	6.8	0.9433
AT1G63100	GRAS		GRAS family transcription fact...		Lus10006322 [exp]	8.0	0.9336
AT5G37530			NAD(P)-binding Rossmann-fold s...		Lus10002651 [exp]	10.6	0.9292
AT5G08610		PDE340	PIGMENT DEFECTIVE 340, P-loop ...		Lus10012633 [exp]	13.3	0.9289
AT1G69070			unknown protein		Lus10019174 [exp]	15.0	0.9324
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10033417 [exp]	15.3	0.8994
AT5G07900			Mitochondrial transcription te...		Lus10002883 [exp]	15.6	0.8679
AT2G40550		ETG1	E2F target gene 1 (.1)		Lus10030540 [exp]	17.0	0.9187

Compare expression of checked genes

Lus10008349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.