Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31800 717 / 0 Integrin-linked protein kinase family (.1) AT2G43850 712 / 0 Integrin-linked protein kinase family (.1.2) AT3G59830 692 / 0 Integrin-linked protein kinase family (.1) AT4G18950 375 / 4e-125 Integrin-linked protein kinase family (.1) AT3G58760 352 / 7e-116 Integrin-linked protein kinase family (.1) AT1G14000 229 / 5e-69 VIK VH1-interacting kinase (.1) AT5G49470 164 / 3e-44 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06640 157 / 9e-41 PAS domain-containing protein tyrosine kinase family protein (.1) AT1G67890 155 / 6e-40 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06620 154 / 1e-39 PAS domain-containing protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027107 [exp] 904 / 0 AT2G31800 709 / 0.0 Integrin-linked protein kinase family (.1) Lus10029277 [exp] 336 / 3e-109 AT4G18950 601 / 0.0 Integrin-linked protein kinase family (.1) Lus10037851 [exp] 253 / 4e-78 AT3G58760 305 / 2e-99 Integrin-linked protein kinase family (.1) Lus10030387 [exp] 241 / 1e-73 AT3G58760 315 / 2e-103 Integrin-linked protein kinase family (.1) Lus10030435 [exp] 216 / 3e-64 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10026626 [exp] 216 / 5e-64 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10004066 [exp] 148 / 3e-39 AT1G14000 174 / 6e-50 VH1-interacting kinase (.1) Lus10016912 [exp] 150 / 5e-38 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10037772 [exp] 148 / 2e-37 AT3G06620 919 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G007800 [exp] 742 / 0 AT2G31800 751 / 0.0 Integrin-linked protein kinase family (.1) Potri.007G142100 [exp] 716 / 0 AT2G43850 726 / 0.0 Integrin-linked protein kinase family (.1.2) Potri.004G064400 [exp] 364 / 7e-121 AT4G18950 632 / 0.0 Integrin-linked protein kinase family (.1) Potri.002G158950 [exp] 236 / 5e-72 AT4G18950 305 / 1e-99 Integrin-linked protein kinase family (.1) Potri.010G164500 [exp] 228 / 2e-68 AT1G14000 757 / 0.0 VH1-interacting kinase (.1) Potri.008G090800 [exp] 222 / 3e-66 AT1G14000 743 / 0.0 VH1-interacting kinase (.1) Potri.017G123100 [exp] 193 / 6e-56 AT4G18950 235 / 5e-73 Integrin-linked protein kinase family (.1) Potri.008G105100 [exp] 163 / 1e-42 AT5G49470 948 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) Potri.010G146000 [exp] 155 / 7e-40 AT3G06620 953 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Potri.006G115800 [exp] 150 / 2e-38 AT5G03730 957 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10008350 pacid=23178451 polypeptide=Lus10008350 locus=Lus10008350.g ID=Lus10008350.BGIv1.0 annot-version=v1.0 ATGGACAACATAGCGTCGCAGCTAAAGAGGGGGATATCCAGGCAATTCTCCACGGGCTCTCTGAGGAGGACGCTGAGCCGGCAATTGACGAGGCAGACCT CGCTTGAGCCGCGCCGGAACAACATGAGGTTCAGCTTCGGGAGGCAATCCTCGCTTGATCCTATCCGTCGGAGTCCTGTTAGGTTGAAGGAGGAGCTGTT GGCGGTTCCGGAGAATCTCGACTGCACGATGCAGATGCTGTTTATGGCGTCCAGCGGAGACGCCAAAGGCGTCGAGGATTTGCTCAACGAAGGGATTGAT GTCAACAGCATTGACTTGGATGGGAGGACCGCTCTGCACATTGCTGCTTGCGAGGGTCATGCCGAGGTTGTCAAGCTTTTGTTGAGCCGTAAGGCCAATA TCGATGCACGCGATCGCTGGGGTAGCACGGCATGTGTTGATGCTAAGTTCTACGGGAATGTAGAAATTTACAACATTCTGAAGGCTCGAGGGGCCAAAGT CCCGAAAACCAGGAAGACACCGATGGCGGTTGCTAATCCTCGAGATGTCCCTGAGTATGAGCTTAATCCATTGGAACTTCAAGTCCGAAGGTCTGATGGC ATCACAAAGGCAAGTTCAAATTTCTATGTGCTTCTGCATGTTATGGAAGAATCAAGGTCATGTATGGTTCATTTTCTAACTGTAGCAGAAAATCAGGGGA CGTATCAAGTGGCTAAGTGGAATGGTACAAAGGTTGCTGTAAAGATACTTGATAAGGATTGCTACTCTGATCCTGAGAGCATAAGTGCATTCAAACATGA ACTTACCTTATTAGAGAAGGTTCGACATCCCAACGTCGTTCAATTTGTTGGAGCAGTGACTCAAAATATACCAATGATGATTGTTGTAGAGTATCAACCA AGGGGAGATCTAGGAAGCTATCTTCAAAAGAAAGGCCGTTTGTCACCGTCAAAAACTCTTAGATTTGCTCTTGACATTGCCAGGCATGTGCAAGTTGAAA TTTCCAATATAAATTCTGCACCATTGCTGCAATATGCATTTAAACTCAATGATCATATAACTCCCAACTGTACTGCAGAAAGGATAATAGAGGGTGTGAA TTATCTTCATGAATGTAAACCAGATCCAATTATCCACTGTGATTTAAAGCCAAAAAACATTATGCTGGATAGTGGTGGTCAATTGAAGGTAGCTGGTTTT GGTTTGATAAAGCTGTCGCAGATTTCAATGGACAAAGCTAAAGTTTCACCAGGAACTCCATTGGACCCCTCAAATGTATATATGGCGCCTGAAGTTTACA AAGATGAAATATTCGACAGAACCGTGGATGCTTACTCTTTTGGTGTTATATTATACGAGATGATTGAAGGAGTGCAACCTTTCCACCCGAAGTCTGCTGA AGAGGCTGTTCAATTGATGGGTTCAGAGAAAATGAGACCAGCATTTAAGGTCAAATCCAGACATTGTCCTCCAGATATGAAAGAGTTGATCGACGAATGT TGGCATCCAGAGCCAGTTGCAAGGCCGACGTTCTCGGAGATCATTGTCCGATTAGACCGAATCGTTTCCCACTGTTCGAAACAGGGATGGTGGAAGGACA CTTTCAAGCTTCCCTGCAACATCAACTCGGTCTTCGATGGAAGCTGGCTAGCTGAAGTTCGTCGTCATTCATTAGCTGTTTACGATAGTATGGGAACCAC TTGTGTCTGGGCCCTAGGGCCAGACTGA
AA sequence Show only first row Show all	>Lus10008350 pacid=23178451 polypeptide=Lus10008350 locus=Lus10008350.g ID=Lus10008350.BGIv1.0 annot-version=v1.0 MDNIASQLKRGISRQFSTGSLRRTLSRQLTRQTSLEPRRNNMRFSFGRQSSLDPIRRSPVRLKEELLAVPENLDCTMQMLFMASSGDAKGVEDLLNEGID VNSIDLDGRTALHIAACEGHAEVVKLLLSRKANIDARDRWGSTACVDAKFYGNVEIYNILKARGAKVPKTRKTPMAVANPRDVPEYELNPLELQVRRSDG ITKASSNFYVLLHVMEESRSCMVHFLTVAENQGTYQVAKWNGTKVAVKILDKDCYSDPESISAFKHELTLLEKVRHPNVVQFVGAVTQNIPMMIVVEYQP RGDLGSYLQKKGRLSPSKTLRFALDIARHVQVEISNINSAPLLQYAFKLNDHITPNCTAERIIEGVNYLHECKPDPIIHCDLKPKNIMLDSGGQLKVAGF GLIKLSQISMDKAKVSPGTPLDPSNVYMAPEVYKDEIFDRTVDAYSFGVILYEMIEGVQPFHPKSAEEAVQLMGSEKMRPAFKVKSRHCPPDMKELIDEC WHPEPVARPTFSEIIVRLDRIVSHCSKQGWWKDTFKLPCNINSVFDGSWLAEVRRHSLAVYDSMGTTCVWALGPD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31800			Integrin-linked protein kinase...		Lus10008350 [exp]	0	1
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10041300 [exp]	1.4	0.7934
AT5G23850			Arabidopsis thaliana protein o...		Lus10037863 [exp]	2.4	0.8004
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10043190 [exp]	3.7	0.7005
AT4G34970		ADF9	actin depolymerizing factor 9 ...		Lus10034494 [exp]	3.9	0.7505
AT5G43400			Uncharacterised conserved prot...		Lus10041147 [exp]	5.9	0.7045
AT1G36320			unknown protein		Lus10036666 [exp]	8.8	0.6905
AT5G03795			Exostosin family protein (.1)		Lus10039142 [exp]	11.8	0.6945
AT1G73320			S-adenosyl-L-methionine-depend...		Lus10031894 [exp]	12.2	0.6887
AT1G10820			Protein of unknown function (D...		Lus10029076 [exp]	13.0	0.6472
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10037069 [exp]	18.3	0.6865

Compare expression of checked genes

Lus10008350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.