Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43990 89 / 2e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027108 [exp] 622 / 0 AT2G43990 95 / 8e-21 unknown protein Lus10027992 [exp] 176 / 5e-48 AT2G43990 86 / 1e-17 unknown protein Lus10008165 [exp] 123 / 3e-30 AT2G43990 74 / 3e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G002200 [exp] 181 / 4e-49 AT2G43990 246 / 3e-72 unknown protein Potri.007G145400 [exp] 134 / 4e-33 AT2G43990 252 / 3e-74 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008351 pacid=23178466 polypeptide=Lus10008351 locus=Lus10008351.g ID=Lus10008351.BGIv1.0 annot-version=v1.0 ATGAAGCAGTCATTGTTCCCATCAACTTCCGGATGCCGAATCCCTCGGCGGGAAGTCAACAAACCACCAACTTCCTTCAACTCAACCAAGTCCAAGCACA AACAGAAGCCGCAGCAGCAGAGAGACGAGCAAGAAATCAGCAGCAGCAGCAGCAGTAGAGATCCATTTCAAGATCTCAGCAATGGCAGTGGTGGTAGCAT CATCCTCAACGCCAGCAGCAGCAACGCTTCTTCTTCGGTTTCCTCCATTGAAGCTCCTCGTGGCTGTCTCAGGTTCTTTCTCAATCACTCTTCCAAACCC ACTTCCAATAATAGCAATAGGAGGAAGAACAACAATAATCAGAATCACAGACCACCCGTAAAGCTCAAATCTTTTTCCTCTGCTAAAATCCCTAATCAGA ATACACAGTCGAATCGAAGGGGAAATGATGATAAAGTAGTTAAGGGAAACCAGCGGCAATCTGGCAGAAATGCTCCGAAACCTAGTTCCAGGGTTTCCAC TTTGAAAAATTCAGTAGGTAATCATGTAAGTAGGCTAAAGTCTGGATCTGGAAATTGCAATCCTGCTCGGTTTGATTCTGATTCGAATTCGACTCCTTTG AGAACTACTGGAAATTTGTCTGCTTTGAATGTTACTAAGGATAGTAATTCAGAGAGTAGCAACTCGGCGAAAACGCCGCCTCTTCATAGCACAATATCGC CTGAGGTTCAGTGTCCGTCTTCAGTCATTTCGACGGTGAAGAAGAGTGTGACCATTACACCTGTTTGTTATGGTGCTGGTCATCTTTTGTCTGGGGTTAC AGACAAGAGGAAGTGTAGGCCTAGAGGTTTACTTGTTGTTGGGGAAGAAATAGTTGTCGATAAATTCGACATCGATGATCATGATTCCGGTGGTGATGTT CTAGTTGCTGGCGGAAATACTGCAATTGATGATCTCTCACCATCCTCATTGCCTGTCAAAGCTTCAATGCATTGGCTTATTAATTCGCCCGGTAATAGCA AGGATTCTCCTGAATTCAGAGGGTTTCCAGCTGCAAATCTGAGTTCTGATATGGACATTTCTCCTCTGAGTTCTGATAGGCATCCGTTCTCGATGGATTT GTTAAGCAGTGTGAATGTAGTGGAGACCCCAGAATCCGACTCTAGCTCCTCCGGAGTAAGAAACATTGTTACAGAGTGTTGGGGTTCCGAATTGGATTCA GTGGATAGAGATCTCCAAAAGCTTTTTAGCACACCAGCTACTACTCCCTCGTTTCGATTTGATTTATCAACCGCAACTTCTTCTGATCATCTTGATATCT TACAGCTTCAGAAGTCTATAGATCACATCCGGGATGCTCGGCTTTCGAGTTCTACGTTGGATGATGTGTCGCATTCCGAAGTTAGAATATTGTGGAGGGA CGGATTGGTGAGTCGGATATTCGAATTGGACGAATTAGATTGTTGTAGATGTTTATCTGATGAAGAAGACAACATGGAGGAGGAGGAGGAGGAGGAGGAG GAGGAGAATGACTGCAACAATGGCCACCCAGAAGAATCTGATCGAACTCGTAAATTCGACATTGGAAATCCTGAGCACTGCTTAGATGGAAATGTAAAAG ATGATGATCATCATCCTTCAAAGTTGTGTTGTATACCTGCTGCAGCAGAGTCTATGGCGATAAGTAGTGATGGAGGTGCTCTGTTTCAATCAGACGACTC GGATTGGACACAGTGTTACAAAAACCAGCTATTTAAGGTATGA
AA sequence Show only first row Show all	>Lus10008351 pacid=23178466 polypeptide=Lus10008351 locus=Lus10008351.g ID=Lus10008351.BGIv1.0 annot-version=v1.0 MKQSLFPSTSGCRIPRREVNKPPTSFNSTKSKHKQKPQQQRDEQEISSSSSSRDPFQDLSNGSGGSIILNASSSNASSSVSSIEAPRGCLRFFLNHSSKP TSNNSNRRKNNNNQNHRPPVKLKSFSSAKIPNQNTQSNRRGNDDKVVKGNQRQSGRNAPKPSSRVSTLKNSVGNHVSRLKSGSGNCNPARFDSDSNSTPL RTTGNLSALNVTKDSNSESSNSAKTPPLHSTISPEVQCPSSVISTVKKSVTITPVCYGAGHLLSGVTDKRKCRPRGLLVVGEEIVVDKFDIDDHDSGGDV LVAGGNTAIDDLSPSSLPVKASMHWLINSPGNSKDSPEFRGFPAANLSSDMDISPLSSDRHPFSMDLLSSVNVVETPESDSSSSGVRNIVTECWGSELDS VDRDLQKLFSTPATTPSFRFDLSTATSSDHLDILQLQKSIDHIRDARLSSSTLDDVSHSEVRILWRDGLVSRIFELDELDCCRCLSDEEDNMEEEEEEEE EENDCNNGHPEESDRTRKFDIGNPEHCLDGNVKDDDHHPSKLCCIPAAAESMAISSDGGALFQSDDSDWTQCYKNQLFKV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43990			unknown protein		Lus10008351 [exp]	0	1
AT5G25590			Protein of unknown function (D...		Lus10022116 [exp]	2.8	0.9540
AT4G14310			Transducin/WD40 repeat-like su...		Lus10011802 [exp]	2.8	0.9560
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10041515 [exp]	5.5	0.9529
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Lus10002895 [exp]	12.0	0.9479
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10018384 [exp]	14.4	0.9520
AT5G26850			Uncharacterized protein (.1.2....		Lus10029842 [exp]	14.8	0.9335
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10030028 [exp]	16.2	0.9442
AT2G07170			ARM repeat superfamily protein...		Lus10027590 [exp]	16.6	0.9478
AT3G10180			P-loop containing nucleoside t...		Lus10012103 [exp]	17.0	0.9383
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10031539 [exp]	17.2	0.9281

Compare expression of checked genes

Lus10008351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.