Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13330 2498 / 0 PA200 proteasome activating protein 200 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027111 [exp] 2070 / 0 AT3G13330 1614 / 0.0 proteasome activating protein 200 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G470600 [exp] 2761 / 0 AT3G13330 2595 / 0.0 proteasome activating protein 200 (.1) Potri.011G167700 [exp] 1790 / 0 AT3G13330 1687 / 0.0 proteasome activating protein 200 (.1) Potri.011G167650 [exp] 737 / 0 AT3G13330 722 / 0.0 proteasome activating protein 200 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11919 [flax] [poplar] DUF3437 Domain of unknown function (DUF3437)
Representative CDS sequence Show only first row Show all	>Lus10008354 pacid=23178460 polypeptide=Lus10008354 locus=Lus10008354.g ID=Lus10008354.BGIv1.0 annot-version=v1.0 ATGCACCTGTACAATGCATGGCTGCCGCCTCCAGTTGCGGAGGAGACGAACAAGGAAGGAGAATCCTTCTCCCGCGTCGTCCACTCCATCAGAAGCGCTT ACGATCCCGACGATCCTGATTCCGTTTACGCCACTCTCAAATGGATTTCCGTCCTTGATATCTTCGTGAAGGCCAAGAGCGATGTCGCCTTGGAAGATGT CACGGCAGTCGTGGAAATTGGGCTGGAGTTGTTCAGTGTCTCGCAGGACAAGCTTTATGCTCAGGTTAGATGGGGAAATATCTTGGTGAGATTACTCAAT AAGTATAGAAAGAAGTTGTCTCTGAAAGTTCCATGGCGCCCTTTTTACGACACTCTTGTTCACACTCATTTCTCAAGGAGCACTGGTCCAGAAGGCTGGA GACTGAGGCAGCGGCACTTCTCAACTGTCACTTCTCTGGTTAGATCCTGCCGGAGGTTCTTTCCTGCTGGTTCGGCCGCTGGGATTTGGTCAGAGTTCAG TTCTCTACTGGAAAATCCGTGGCATAATTCATCATTTGAAGGATCTGGGTTTGTGCGACTGTTCCTTCCCACAAACTTGGATAACCAGGATTTTTATACC ATTGAATGGGTGAGAAAGAGTATGGACCTGTGGGACTCTATGCCGAATTGCCAATTCTGGAACAGCCAATGGGCTGCCATAATAGCTCGGGTCATAAAGA ACTATGACTTCATTGATTGGGAGTCCTTCTTACCGACACTGTTCACTCGGTTCTTAAACATGTTTGAGGTTCCAGTGGCAAACGGAAGTGGATCATATCC CTTTCCTGTCGATGTTCCAAGAAATACAAGATTCTTATTTTCAAACAAAACAGTCACCCCGACTAAGGCTATTTCCAAATCAATTGTCTATCTATTGAAG CCTGGCAGTTCAACAGAAAAATACTTTGAGAAATTAGTTAACCTCTTAGAACAGAGCAAAGATAATATACAAGCAAACCTCTGTCTGGGAAGATCAGAGA GGATTGCATTTGTCAATATATTGCTTAAGTTAATTGATCGCGGACAATACAGCAAGAATGAGCATCTGTCTGAGACTGTAGCTGCAGCGACTTCTATCCT ATCTTATGTGGAACCCTCACTAGTTCTACCATTCTTAGCATCTCGATTCCATCTAGCTCTGGAGACGATGACTGCCACCCACCAGTTGAAAACTGCTGTG ATGTCAGTGGCATTTGCAGGGCGCTCATTATTCCTCACATCCTTATCAACCTCGGCGAAAGAGCTTGACATTGCTGGTGATAATGAGACACTCATTGATC TCCTGATGATTTCATTATCCAATGCATTACTTGGCATGGATGCTAATGATCCTCCTAAAACTTTGGCAACCATGCAGCTGATTGGTTCAATATTTTCTAA TATTTCTACTTTGGATGATAGCATGGATGACTCGTCATTCATGTCAATGATCCGCATTTCTGAGTGGTTAGATGAGTTCTTGTGTCGGTTGTTCTCCTTA CTTCAGCATTTGGAACCAAACAGTGTTGTCAATGAAGGTTTACATTCAACATCAACATCAGGGACATTTTTAGTTGAAGAGGGTCCATATTACTACTGTA TGCTTGAAATCTTGCTTGGAAGACTTTCAAAACCATTGTACAATCAGGCTTTGAAGAAAATTTCGAAGTTCGTAAGGACAAATATTCTTCCTGGAGCAAT TGCAGAGGTTGGATTGCTTTGTTGTGCCTGTGTTCACTCGAACCCAGAAGAGGCAGTTTCAGCTCTCGTTGAGCCAATGTTGTCTGCTGTTATATCTTCT CTGAAAGGAACACCATCAACAGGATTTGGAGGAAGGGGAATCCTTGACGCTTCAATTTCATCGAAGGCAAAGCCAACATTGTCTCCAGCTCTTGAAACAT CAATTGATTGTCAATTGAAAATACTGTCAGTTGCTATCAACTATGGAGGTCCCGTCCTTCTTCGTTTCAAGGATAAATTCATTGAAGCCGTCACTTCTGC TTTCGAATCTCCCTCTTGGAAGGTTAATGGTGCTGGTGATCATCTTCTAAGGTCCCTAATGGGAAGCCTGGTTCTTTATTACCCTGTAGATCAATACAGG TGCATTTCGCAGCATCCTGCTGCTACAGCATTGGAAGAGTGGATTGGCACAAAAGATTATACCAATAAGGACCAGTCGATGGCACCCAAGTGGCATGTTC CAAATGATGCAGAAGTTCAATTTGCAAATGAACTTTTGAACCTTCATTTTCAATCAGCTTTAGATGATCTCTTGAGGATATGCCGAGATCGCATCCATTC CGACCCAGGCAATGAGAAAGAGCACTTGAAAGTGACTCTTCTGCGCATCGATTCTTCTCTGCAAGGGGTTTTATCTTGCTTACCTGATTTCAAGCCATCC CTCAGAACTGGGGTTGTTGGCGATCAAAATCACATGTCCTTTCTGATAGCTGGAGCAACAGGTGCAACTGTTGGCAGCCCTGAACTACGGGAAAAAGCTG CTGAGATTATACACAGTGCTTGCAAATATCTATTGGAGGAAAAATCAGATGATAGTATTCTATTGATACTCATTATCCGGATAATGGATGCATTAGTAAA CTACGGAAGTTTGGAGTATGATGAATGGTCAAATCACAGGCAGGCATGGAAGTTGGAATCTGCTGCTATCATAGAACCTCCAATAAACTTTATAGTTTCA TCTCATTCTAAAGGGAAAAAGAGACCTCGATGGGCTCTTATTGACAAGGCCTACATGCATAATACATGGAGATCATCGCAATCATCCTACCATCTTTTCC GTACGAGTGGAAGTTTCGCTCCCTCTGACCATGCAGCTGTTTTGATCGCTGATCTACTAAATCTTTCTCAGCATAGCTATGAAACAGTTCGAGGACTTGC TGGAAAATCTCTGCTCAAGATGATTAAGAGATGGCCATCTATGATCTCCAAGTGTGTGCTTTCTCTTACTGAAAATCTGAAGAACCCAAGTGCTCCTGAA TGTGCAGTCCTAGGTTCTTGTGCTGTACTTTCCACTCAAACAGTTCTCAAGCATTTGACAATGGATCCAAAGTCATTCTCTTCATTTCTCCTTGGAATTC TGTCGAGCTCTCATCACGAGTCCTTGAAATGCCAGAAGGCAATTAATGAGCTTTTTGTCAAGTACAACATCTACTTCTCAGGAGTATCCAGGAACATTTT CAGAACATCAGACAGTCAAATGGGCGGATCAGATTTTTCAGATTTGGTTTCTCAGATTGGATCTATGAGTTTTGAGTCTTCTGGTTTGCATTGGAGTGAT TGGGTCAGTAAACTAAACGATACTGGTATAGGTCACTTTCTGAAAAGTTTGAAGAGCCAACTTCCACAAACCAGGATGCTTTCAATTTCTGCACTGAATA CACTCTTAAAAGAATCACCATACAAACTTTCGGCCGAGGATCAAAATGCTGCTATGGAAGTGCTGGGTACCAATACCAAATCTTCCCTTGAAGGGGCGCT GGGTGAAATTTTTCAGGAGGAAGGATTCTTTAATGAGACTTTGAATAGCCTATCACATGTTCATATTATCACTGATAACGAGAGTTCTTCCAGAGGAAAT CATGGGAGTTCTTCTTTCCAAAGCTTGGCAGATAAATCAATCACCCGATTTTATTTTGATTTTTCATCCTCATGGCCTCGTACACCTAGCTGGATCTCTC TATTAGGAGGGGATAGCTTTTACCCGAGCTTTGCACGAATTTTCAAGCGTCTGGTGCAAGAATGTGGCATGCCCATTCTGATGGCACTAAAAAGCTCATT GGAAGAATTTGCAAATGCCAAGGAAAGGTCTAAGCAGTGTGTCGCAGCAGAAGCCTTTGCTGGTGTGTTGCACTCTGATTTTGATGGTCTTTCAGGAGCG TGGGACAGCTGGATGATGGGTCAGTTACAGAGTATTATTCTTGGGCAGTCGGTGGAGTCTATACCTGAGTGGTCAGCTTGCATACGGTATGCAGTTACTG GGAAAGGGAAGCATGGTACAGGAATCCCCCTTCTTAGACAGAAGATTTTGGACTGCTTGATAACACCCCTACCACCTGCGGTAACAACTACTGTAGTCGC TAAGCGTTATACTTTTGTTTCTGCTGCACTTATAGAGATATCCCCACATAAGATGTCTGTGACTGAAATGGAGGTTCACAAAAAACTCTTGGATGAGTTG CTTGCAAACATGTGCCATTCATCAGCCCAAGTGAGGGAAGCTGTAGGAGTTAACCTCTCCATATTATGCTCTAATATTCGCCTTCATGCATTGAATTCCG TTCAAGAGGCTGACCATGACAATGACAGCCCATTGAAAACGGAAAATTGGGCTGTGTTACTTACAGAACGAGCATCTGAGATGGTCACGAGTATCCAGAA TACCAGTCCATCAGACTTGGGGACAGCTGCTCAGTCTAGTTCTGATAATGTCACAGTGAATGGAGATATACGAGATGATGTTAAGTGGATGGAAACGCTA TTTCATTTTATTGTCTCAACTATGAAGTCTGGAAGATCATCTTATTTGGTTGATGTCATTGTCAGATTCATCTATCCTGTCATTGCATTACAAGAAACGT CAAATAAAGATTTGTCAACTCTGGCCAAGGCTGCTTTCGAGTTGCTAAAGTGGAGAGTCTTCTTGGAACCCCATCTCCAGAAGGTCGTTGAAGTCATTCT TTCTTCTTCTACTGATTCCAATTGGCGGACTAGATCAGCTACTCTTACATATCTACGTACTTTTATGTATAGGCACACTTACATACTCTCCAAAGAGGAA AAACAAAAAATTTGGAGAACTGTGGAGAGTCTGCTGGGAGACAATCAAGTAAGGGAGCATGCTGCAGCAGTTCTTGCAGGTCTAATGAAAGGTGGAGATG AGGACCTTGCTTGTGATTTCCGTGAGAGAGCTTTAGCACAGGCAAATACCTTGCAAAAGATGAAAAGGCAGAGGAATCAAAGAAATGGACAATCCGTATC GTCAATCCATGGTGCTGTACTTGCACTTACAGCTTCTGTATTATCGGTGCCATATGATATGCCCGGTTGGTTGCCAGAGCATGTGACTCTACTGGCGCGT TTCGCGGCAGAGCCTTCACCTGTAAAATCTACAGTCACGAAAGCAGTTGCCGAGTTTCGGAGGACTCACGCAGACACTTGGACTTTTCAGAAGGATCAGT TCACCGAAGAGCAACTAGAGGTTCTCGCCGATACATCGTCTTCATCCTCGTACTTCGCATGA
AA sequence Show only first row Show all	>Lus10008354 pacid=23178460 polypeptide=Lus10008354 locus=Lus10008354.g ID=Lus10008354.BGIv1.0 annot-version=v1.0 MHLYNAWLPPPVAEETNKEGESFSRVVHSIRSAYDPDDPDSVYATLKWISVLDIFVKAKSDVALEDVTAVVEIGLELFSVSQDKLYAQVRWGNILVRLLN KYRKKLSLKVPWRPFYDTLVHTHFSRSTGPEGWRLRQRHFSTVTSLVRSCRRFFPAGSAAGIWSEFSSLLENPWHNSSFEGSGFVRLFLPTNLDNQDFYT IEWVRKSMDLWDSMPNCQFWNSQWAAIIARVIKNYDFIDWESFLPTLFTRFLNMFEVPVANGSGSYPFPVDVPRNTRFLFSNKTVTPTKAISKSIVYLLK PGSSTEKYFEKLVNLLEQSKDNIQANLCLGRSERIAFVNILLKLIDRGQYSKNEHLSETVAAATSILSYVEPSLVLPFLASRFHLALETMTATHQLKTAV MSVAFAGRSLFLTSLSTSAKELDIAGDNETLIDLLMISLSNALLGMDANDPPKTLATMQLIGSIFSNISTLDDSMDDSSFMSMIRISEWLDEFLCRLFSL LQHLEPNSVVNEGLHSTSTSGTFLVEEGPYYYCMLEILLGRLSKPLYNQALKKISKFVRTNILPGAIAEVGLLCCACVHSNPEEAVSALVEPMLSAVISS LKGTPSTGFGGRGILDASISSKAKPTLSPALETSIDCQLKILSVAINYGGPVLLRFKDKFIEAVTSAFESPSWKVNGAGDHLLRSLMGSLVLYYPVDQYR CISQHPAATALEEWIGTKDYTNKDQSMAPKWHVPNDAEVQFANELLNLHFQSALDDLLRICRDRIHSDPGNEKEHLKVTLLRIDSSLQGVLSCLPDFKPS LRTGVVGDQNHMSFLIAGATGATVGSPELREKAAEIIHSACKYLLEEKSDDSILLILIIRIMDALVNYGSLEYDEWSNHRQAWKLESAAIIEPPINFIVS SHSKGKKRPRWALIDKAYMHNTWRSSQSSYHLFRTSGSFAPSDHAAVLIADLLNLSQHSYETVRGLAGKSLLKMIKRWPSMISKCVLSLTENLKNPSAPE CAVLGSCAVLSTQTVLKHLTMDPKSFSSFLLGILSSSHHESLKCQKAINELFVKYNIYFSGVSRNIFRTSDSQMGGSDFSDLVSQIGSMSFESSGLHWSD WVSKLNDTGIGHFLKSLKSQLPQTRMLSISALNTLLKESPYKLSAEDQNAAMEVLGTNTKSSLEGALGEIFQEEGFFNETLNSLSHVHIITDNESSSRGN HGSSSFQSLADKSITRFYFDFSSSWPRTPSWISLLGGDSFYPSFARIFKRLVQECGMPILMALKSSLEEFANAKERSKQCVAAEAFAGVLHSDFDGLSGA WDSWMMGQLQSIILGQSVESIPEWSACIRYAVTGKGKHGTGIPLLRQKILDCLITPLPPAVTTTVVAKRYTFVSAALIEISPHKMSVTEMEVHKKLLDEL LANMCHSSAQVREAVGVNLSILCSNIRLHALNSVQEADHDNDSPLKTENWAVLLTERASEMVTSIQNTSPSDLGTAAQSSSDNVTVNGDIRDDVKWMETL FHFIVSTMKSGRSSYLVDVIVRFIYPVIALQETSNKDLSTLAKAAFELLKWRVFLEPHLQKVVEVILSSSTDSNWRTRSATLTYLRTFMYRHTYILSKEE KQKIWRTVESLLGDNQVREHAAAVLAGLMKGGDEDLACDFRERALAQANTLQKMKRQRNQRNGQSVSSIHGAVLALTASVLSVPYDMPGWLPEHVTLLAR FAAEPSPVKSTVTKAVAEFRRTHADTWTFQKDQFTEEQLEVLADTSSSSSYFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13330		PA200	proteasome activating protein ...		Lus10008354 [exp]	0	1
AT3G13330		PA200	proteasome activating protein ...		Lus10027111 [exp]	1.0	0.9686
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10024282 [exp]	2.8	0.9364
AT1G71220		UGGT, PSL2, EBS...	PRIORITY IN SWEET LIFE 2, EMS-...		Lus10019946 [exp]	3.0	0.9351
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10026261 [exp]	3.5	0.9276
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10014156 [exp]	5.3	0.8900
AT1G71220		UGGT, PSL2, EBS...	PRIORITY IN SWEET LIFE 2, EMS-...		Lus10015475 [exp]	6.5	0.9035
AT1G02080			transcription regulators (.1.2...		Lus10042876 [exp]	8.7	0.9197
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10003354 [exp]	11.7	0.9195
					Lus10016154 [exp]	12.3	0.8836
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Lus10029717 [exp]	13.5	0.8635

Compare expression of checked genes

Lus10008354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.