Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56120 248 / 3e-83 unknown protein AT3G12870 95 / 6e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027112 [exp] 376 / 8e-134 AT5G56120 253 / 2e-85 unknown protein Lus10031198 [exp] 99 / 4e-25 AT3G12870 306 / 3e-107 unknown protein Lus10031776 [exp] 94 / 2e-23 AT3G12870 311 / 3e-109 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G470800 [exp] 286 / 8e-99 AT5G56120 293 / 2e-101 unknown protein Potri.011G167900 [exp] 261 / 9e-89 AT5G56120 276 / 7e-95 unknown protein Potri.005G096100 [exp] 93 / 5e-23 AT3G12870 231 / 2e-77 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008355 pacid=23178481 polypeptide=Lus10008355 locus=Lus10008355.g ID=Lus10008355.BGIv1.0 annot-version=v1.0 ATGGCCGGTGTGGAATTGAAAGACGCTCATGTCGTGGTGGAGATCCCGGTAGATGAGGAGCATCACCACGAGAAGCAGCTACTCTGCATCAAGGCTGCGA TCCAGAACCACCCACTTACCGAAATCTCCCGAAGCCCGGGGCACCTGTTGCTTCTAAAACTGTGGCAGAGGGAAGAAGATCTCTGTGGGAGGAGGATAGC GATGAAGGAATCCAGAATGGATTCCATCAAGCGAGACATCTTCCAACTCTGCTGCTTCTTCCTTGTCTTCCACGGCTTCTTCTTCACCATCCTCTTCACT TCCTCCTCTTCTTCTACTTCTTCCACTAGTAGTGCTAAGTGCAACAGCAAGAAATGGTGGATACCTGGTCTAGTGTCGTTGTGCACTTCACTTGTGTTTG TGTGGCTGGTACAGGTACAGCTTTACAGGTACTGGAAGGTATGGAGGCAGGTGCAGAGGGAGAAGGGCGATAACCGGGCGGTGACTAGGTGCATTCAGGA GCTGAGGATGAAAGGAGGGAGCTTTGAGTTGGGGAAAGATCCTTACCAGAGCTGGGGAGGGAAGAAGATGAAAAGTTCCAGCGTCGAGATTAAGTGGAAG CCCGTCACTTGGTGCTCCCAGAACTTGGTTGTCTTCTGTCTGCTTTGCTTCACTGGTCTGGTCTTCCCTGCTTCCAGACTCATCCTTTGCGGCAGCTTCT AG
AA sequence Show only first row Show all	>Lus10008355 pacid=23178481 polypeptide=Lus10008355 locus=Lus10008355.g ID=Lus10008355.BGIv1.0 annot-version=v1.0 MAGVELKDAHVVVEIPVDEEHHHEKQLLCIKAAIQNHPLTEISRSPGHLLLLKLWQREEDLCGRRIAMKESRMDSIKRDIFQLCCFFLVFHGFFFTILFT SSSSSTSSTSSAKCNSKKWWIPGLVSLCTSLVFVWLVQVQLYRYWKVWRQVQREKGDNRAVTRCIQELRMKGGSFELGKDPYQSWGGKKMKSSSVEIKWK PVTWCSQNLVVFCLLCFTGLVFPASRLILCGSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56120			unknown protein		Lus10008355 [exp]	0	1
AT5G56120			unknown protein		Lus10027112 [exp]	1.0	0.9749
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Lus10021611 [exp]	3.5	0.9538
AT1G67820			Protein phosphatase 2C family ...		Lus10006222 [exp]	4.0	0.9540
AT5G66230			Chalcone-flavanone isomerase f...		Lus10014261 [exp]	8.2	0.9490
AT5G42330			unknown protein		Lus10013229 [exp]	9.2	0.9423
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10001909 [exp]	11.8	0.9307
AT5G12360			unknown protein		Lus10038810 [exp]	12.5	0.9340
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10039033 [exp]	15.5	0.9327
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10030746 [exp]	17.2	0.9307
AT1G67820			Protein phosphatase 2C family ...		Lus10036871 [exp]	17.4	0.9143

Compare expression of checked genes

Lus10008355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.