Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56130 583 / 0 THO3, AtTEX1 Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 99 / 8e-23 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT5G08560 82 / 3e-17 transducin family protein / WD-40 repeat family protein (.1.2) AT2G43770 79 / 1e-16 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 75 / 5e-15 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 74 / 1e-14 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 73 / 4e-14 TAF5 TBP-associated factor 5 (.1) AT3G18140 66 / 4e-12 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G23430 67 / 5e-12 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 67 / 5e-12 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027113 [exp] 625 / 0 AT5G56130 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024972 [exp] 92 / 2e-20 AT5G67320 819 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10004167 [exp] 87 / 1e-18 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 86 / 3e-18 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10006916 [exp] 79 / 2e-16 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 78 / 4e-16 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 78 / 4e-16 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 76 / 3e-15 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 75 / 3e-15 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G470900 [exp] 600 / 0 AT5G56130 586 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G144400 [exp] 99 / 6e-23 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.007G050100 [exp] 95 / 2e-21 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.002G051900 [exp] 84 / 4e-18 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 78 / 4e-16 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G206600 [exp] 79 / 5e-16 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.006G045800 [exp] 74 / 1e-14 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.005G148500 [exp] 73 / 2e-14 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002700 [exp] 73 / 4e-14 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.006G145800 [exp] 72 / 4e-14 AT4G29830 486 / 2e-174 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10008356 pacid=23178471 polypeptide=Lus10008356 locus=Lus10008356.g ID=Lus10008356.BGIv1.0 annot-version=v1.0 ATGGAGGAGGCAACAATTCCCTTCAAGAATTTGCACAGCAGAGAGTATCAAGGTCACAAGAAGAAGGTGCATTCGGTTGCTTGGAATTGTACCGGCACCA AGCTCGCTTCTGGTTCCGTTGATCAAACTGCTCGAATTTGGCACATTGAACCCCACGGCCATGGGAAAGCTAGAGACATTGAGCTGAAAGGGCACACTGA TAGTGTGGATCAGCTTTGTTGGGACCCCAAACATGCTGATCTTATTGCAACAGCATCTGGAGACAGGACTGTTCGTCTTTGGGATGCTCGTAGTGGGAAA TGCTCTCAGCAGGCAGAACTTAGCGGAGAAAATATAAACATCACCTACAAACCAGATGGTACCCATGTAGCTGTTGGTAATAGGGACGATGAACTGACAA TTTTGGATGTTCGGAAATTTAGAACAATTCATAACCGCAAGTTTAATTATGAGGTGAATGAGATTGCTTGGGATATGACTGGAGAGATGTTCCTTTTGAC GACTGGAAATGGCACTGTTGAAGTACTTAAATACAACCCGGACCTCAAACCAATGGACACCCTCATGGCTCATACAGCAGGTTGCTATTGCATTGCCATT GATCCAAAAGGAAGATATTTTGCTGTGGGGAGTGCTGATTCATTAGTCAGTCTTTGGGATATTTCAGAGATGCTCTGTGTCCGGACATTTACCAAACTAG AATGGCCTGTGAGGACGATAAGCTTCAATCACACAGGAGAGTACATAGCTTCTGCAAGTGAAGACTTGTTCATTGACATATCCAATGTTCAAACTGGTCG ATCAGTTCATCAGATCCCGTGTCGAGCTGCCATGAACAGTGTTGAGTGGAACCCCAAGTACAATTTGCTTGCATATGCTGGCGATGACAAAAAGCATCAG GCTGATGAAGGTGTTTTCCGTATATTTGGTTTTGACACAGCCTAA
AA sequence Show only first row Show all	>Lus10008356 pacid=23178471 polypeptide=Lus10008356 locus=Lus10008356.g ID=Lus10008356.BGIv1.0 annot-version=v1.0 MEEATIPFKNLHSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARIWHIEPHGHGKARDIELKGHTDSVDQLCWDPKHADLIATASGDRTVRLWDARSGK CSQQAELSGENINITYKPDGTHVAVGNRDDELTILDVRKFRTIHNRKFNYEVNEIAWDMTGEMFLLTTGNGTVEVLKYNPDLKPMDTLMAHTAGCYCIAI DPKGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRSVHQIPCRAAMNSVEWNPKYNLLAYAGDDKKHQ ADEGVFRIFGFDTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56130		THO3, AtTEX1	Transducin/WD40 repeat-like su...		Lus10008356 [exp]	0	1
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10034689 [exp]	2.4	0.8738
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10041997 [exp]	5.3	0.8285
AT2G24530			unknown protein		Lus10042444 [exp]	5.5	0.8190
AT4G21100		DDB1B	damaged DNA binding protein 1B...		Lus10020922 [exp]	6.2	0.8425
AT5G08120		MPB2C, ATMBP2C,...	movement protein binding prote...		Lus10017881 [exp]	6.3	0.8206
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10010517 [exp]	7.1	0.8305
AT2G27285			Coiled-coil domain-containing ...		Lus10020557 [exp]	12.5	0.7690
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10036825 [exp]	14.5	0.8155
AT5G19420			Regulator of chromosome conden...		Lus10009701 [exp]	14.7	0.8091
AT5G54930			AT hook motif-containing prote...		Lus10016478 [exp]	14.8	0.8026

Compare expression of checked genes

Lus10008356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.