Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26470 285 / 4e-98 Calcium-binding EF-hand family protein (.1.2) AT3G24110 160 / 5e-49 Calcium-binding EF-hand family protein (.1) AT3G50360 63 / 4e-12 CEN1, ATCEN2 CENTRIN 1, centrin2 (.1) AT1G76040 64 / 7e-12 CPK29 calcium-dependent protein kinase 29 (.1.2) AT5G12180 63 / 2e-11 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 62 / 3e-11 CPK34 calcium-dependent protein kinase 34 (.1) AT1G18210 59 / 1e-10 Calcium-binding EF-hand family protein (.1.2) AT1G73630 58 / 2e-10 EF hand calcium-binding protein family (.1) AT4G23650 59 / 7e-10 CDPK6, CPK3 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) AT1G74740 57 / 2e-09 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027114 [exp] 254 / 2e-86 AT4G26470 165 / 6e-52 Calcium-binding EF-hand family protein (.1.2) Lus10016675 [exp] 153 / 1e-45 AT3G24110 203 / 2e-65 Calcium-binding EF-hand family protein (.1) Lus10032640 [exp] 65 / 7e-12 AT3G20410 790 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10009947 [exp] 64 / 1e-11 AT5G19450 889 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10030134 [exp] 63 / 3e-11 AT5G19450 783 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10019349 [exp] 63 / 3e-11 AT4G37000 289 / 4e-94 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1) Lus10027361 [exp] 62 / 5e-11 AT5G19450 909 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10018012 [exp] 59 / 9e-11 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10001775 [exp] 58 / 2e-10 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G471100 [exp] 298 / 4e-103 AT4G26470 331 / 3e-116 Calcium-binding EF-hand family protein (.1.2) Potri.001G314900 [exp] 181 / 8e-57 AT3G24110 216 / 1e-70 Calcium-binding EF-hand family protein (.1) Potri.017G054902 [exp] 91 / 7e-23 AT3G24110 70 / 3e-15 Calcium-binding EF-hand family protein (.1) Potri.012G048200 [exp] 62 / 8e-12 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.005G138000 [exp] 61 / 2e-11 AT3G50360 275 / 4e-96 CENTRIN 1, centrin2 (.1) Potri.001G097400 [exp] 63 / 3e-11 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.005G215700 [exp] 60 / 3e-11 AT3G22930 200 / 8e-67 calmodulin-like 11 (.1) Potri.001G257100 [exp] 62 / 4e-11 AT5G12480 903 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Potri.003G134000 [exp] 62 / 8e-11 AT4G23650 776 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.006G065900 [exp] 59 / 2e-10 AT3G07490 131 / 1e-38 calmodulin-like 3, ARF-GAP domain 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10008357 pacid=23178478 polypeptide=Lus10008357 locus=Lus10008357.g ID=Lus10008357.BGIv1.0 annot-version=v1.0 ATGGGAGATGGTGCGCTTAAGGCTGAATCACCTAGAACGATACCAGAGACGAAGATCGAGTCTAAAATACTTGACGCCATGAAGCGGAGAGAAGAAGCTG CTGGATGTTCCGTGCGATCCTTCAACAGCCTCCTCTTGAAGTTCCCCAAGATCGATGACAGCATGAAGAACTGCAAAGCCATTTTCGAGGAATTTGATGT GGACTCCAATGGCACCATTGATCTCGGAGAGCTCAGAAAATGTTTCACCAAGCTGGAGATCTCTTTCACTGAAGAGGAGATCAATCAGCTCTTCGAGGCA TGTGATATTAATGACGACTATGGAATGAACTTTCATGAGTTCATAGTGCTTCTTTGTCTGGTTTATCTTCTCAAGGATGCTGCTGCTGCTGCCGACGATA ATAAACCGAAGATGGGAATGCCGAAGTTGGAGGGTGGTTTTGAAACATTAGTTGATGCGTTCGTGTTCTTGGACAAGAACAAGGATGGTTACGTGAGCAA GAATGAGCTGATACAAGTCATACAGGACTCGGGCGAACGTGCTGCAGGACGAATAGCCTTGAAGAGATTCGAGGAGATGGACTGGGATAAAAATGGGACA GTGAACATCAAAGAGTTCCTGTTTGCTTTTACTAACTGGGTCGGCATTGACGATGAAGATGAGGATGAAGACGACGATGGAGATGAAAGCAACAACGTTG GCTGA
AA sequence Show only first row Show all	>Lus10008357 pacid=23178478 polypeptide=Lus10008357 locus=Lus10008357.g ID=Lus10008357.BGIv1.0 annot-version=v1.0 MGDGALKAESPRTIPETKIESKILDAMKRREEAAGCSVRSFNSLLLKFPKIDDSMKNCKAIFEEFDVDSNGTIDLGELRKCFTKLEISFTEEEINQLFEA CDINDDYGMNFHEFIVLLCLVYLLKDAAAAADDNKPKMGMPKLEGGFETLVDAFVFLDKNKDGYVSKNELIQVIQDSGERAAGRIALKRFEEMDWDKNGT VNIKEFLFAFTNWVGIDDEDEDEDDDGDESNNVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26470			Calcium-binding EF-hand family...		Lus10008357 [exp]	0	1
AT3G08890			Protein of unknown function, D...		Lus10012232 [exp]	2.2	0.9076
AT1G31940			unknown protein		Lus10010425 [exp]	2.8	0.8684
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10023851 [exp]	4.9	0.8825
AT5G66590			CAP (Cysteine-rich secretory p...		Lus10022481 [exp]	5.2	0.8437
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10039323 [exp]	5.5	0.8328
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10022804 [exp]	6.7	0.8776
AT5G01830			ARM repeat superfamily protein...		Lus10025244 [exp]	7.7	0.8534
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10028820 [exp]	8.8	0.8314
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10032705 [exp]	11.2	0.8676
AT5G20030			Plant Tudor-like RNA-binding p...		Lus10003091 [exp]	11.6	0.8252

Compare expression of checked genes

Lus10008357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.