Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22860 484 / 3e-168 Serine carboxypeptidase S28 family protein (.1.2) AT2G24280 392 / 5e-132 alpha/beta-Hydrolases superfamily protein (.1) AT5G65760 357 / 6e-118 Serine carboxypeptidase S28 family protein (.1) AT3G28680 139 / 2e-38 Serine carboxypeptidase S28 family protein (.1) AT4G36195 99 / 7e-22 Serine carboxypeptidase S28 family protein (.1.2.3) AT2G18080 97 / 2e-21 EDA2 embryo sac development arrest 2, Serine carboxypeptidase S28 family protein (.1) AT4G36190 87 / 3e-18 Serine carboxypeptidase S28 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021400 [exp] 518 / 0 AT5G22860 558 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10005354 [exp] 517 / 1e-180 AT5G22860 557 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10005353 [exp] 496 / 1e-172 AT5G22860 476 / 3e-165 Serine carboxypeptidase S28 family protein (.1.2) Lus10021325 [exp] 346 / 2e-113 AT2G24280 515 / 5e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10011603 [exp] 343 / 6e-113 AT5G65760 753 / 0.0 Serine carboxypeptidase S28 family protein (.1) Lus10017002 [exp] 317 / 1e-103 AT2G24280 447 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10039645 [exp] 150 / 7e-41 AT5G65760 374 / 7e-127 Serine carboxypeptidase S28 family protein (.1) Lus10028365 [exp] 108 / 7e-25 AT4G36195 655 / 0.0 Serine carboxypeptidase S28 family protein (.1.2.3) Lus10041817 [exp] 62 / 4e-10 AT4G36190 325 / 1e-108 Serine carboxypeptidase S28 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G002200 [exp] 558 / 0 AT5G22860 534 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.018G018500 [exp] 550 / 0 AT5G22860 522 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.010G232300 [exp] 546 / 0 AT5G22860 528 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213400 [exp] 545 / 0 AT5G22860 514 / 8e-180 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G212900 [exp] 541 / 0 AT5G22860 481 / 6e-167 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213200 [exp] 539 / 0 AT5G22860 518 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213500 [exp] 536 / 0 AT5G22860 593 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213300 [exp] 530 / 0 AT5G22860 588 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.009G002300 [exp] 453 / 4e-156 AT5G22860 449 / 1e-154 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213000 [exp] 409 / 8e-140 AT5G22860 371 / 6e-126 Serine carboxypeptidase S28 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05577 [flax] [poplar] Peptidase_S28 Serine carboxypeptidase S28
Representative CDS sequence Show only first row Show all	>Lus10008358 pacid=23178475 polypeptide=Lus10008358 locus=Lus10008358.g ID=Lus10008358.BGIv1.0 annot-version=v1.0 ATGACCTCCTTGCTCAGCCTCCTCCTCGTCACCCTCGCCGCCGCGGCCGTTGCCATGTCCAAGGCTTCTCGCTTTGGCAAGACCCCGAGCCTCAACCCGA CCCACGACAGCCGTCTGATTGGTCGTCTATGGTCATCAACGGCTGAGGATGATAACGACGATGCTCTCGCTGATATGAAGACCTTGTTCCACACCCAGAC ACTGGACCACTTCAACTACGCCCCGCAAAGCTACTCCACTTTCCAGCAGCGCTACGTCATCGATTCCAGCCACTTTTCCGCTGCGGCAGAAGCGTCGCCG GTGTTGGTTTATCTCGGGGCAGAGGCGCCGTTAGATAACGACCTTGTTTCCATTGGGTTTCTCCGGGAGAACGGCGCCAGGTTTGGCGCACTTTTAGTAT ACATAGAGCATAGGTTTTATGGGAAGTCGATTCCAGGAGGAGGAAGCTATGTTAACGATAAGGAACTAAGAGGATATTTCAACTCAGCTCAAGCTTTAGC TGATTATGCTGAAATAATCCTTCAAGTTAAGCAAGATTTCAAAGCTCACGATTCTCCCGTTGTTGTCATTGGAGGTTCTTATGGAGGAATGTTGGCGTCG TGGTTTCGTTTGAAGTATCCTCACATTGCGCTAGGAGCGTTGGCGTCTTCTGCACCAATCCTTTACTTCGACGACATCACATCATCAGACGGATACTACA ATCTCGTCACCAAAGATTTCAAAGAAGTTAGCGAGACATGCTACAAAACTATAAAGAAGTCATGGTCGGCGATACAAGAAATCGCTACACTAGAAGGCGG CCTTTCCCTCCTTGGCCAGATATTCAAAACTTGCAAACCCTTAAACACCTCATCGGAGCTCATCAACTACCTAGAATCACTGTACGCTTCAGCCGCTCAG TACAACGACCCGTTACGAAATCCGGTCGCTGCAATTTGCCGAGGGATAGAAGGAGCAAGGGTTTCGGCCACGACTATCAGCGACGATGACAAAAGACCGT CACCATTGCTAAGCAAAATAGTCGCAGGAGTTGTCGCTATTAGCGGTGTAAAGCAGTGCTACGTCAATCCGCCAACTGTACCATCCGAGACGACCATTGG ATGGCGATGGCAGACATGCAGTGAAATGGTATTCCCAATTGGGATCGGAAACAACACGATGTTCCCATCCGAACCCTTCGATTTAACGGCCTACAGTCAA CAGTGTCAATTTCTGTACGGAGTTCCTCCTCGTCCTCACTGGGTCACCACTTCATACGGAGGACATAGCATAAAATTGGTGCTTAAGAGGTTTGGCAGCA ATATCATCTTCTCCAATGGGCTGAAAGATCCTTACAGCAGCGGCGGGGTGTTGGAGGACATATCTGATTCCATAGTGGCTGTTCGCACCGTAAACGGATC TCATTGCTTGGACATAGTCCGAGAGCATGAAAGTGACCCGGATTGGCTCAAGGCGCAACGGCAACTAGAGATCGATATTCTACAAGGATGGATTTCCCAA TACCATGATGATCTTCACAAGGGTGTCAAATAG
AA sequence Show only first row Show all	>Lus10008358 pacid=23178475 polypeptide=Lus10008358 locus=Lus10008358.g ID=Lus10008358.BGIv1.0 annot-version=v1.0 MTSLLSLLLVTLAAAAVAMSKASRFGKTPSLNPTHDSRLIGRLWSSTAEDDNDDALADMKTLFHTQTLDHFNYAPQSYSTFQQRYVIDSSHFSAAAEASP VLVYLGAEAPLDNDLVSIGFLRENGARFGALLVYIEHRFYGKSIPGGGSYVNDKELRGYFNSAQALADYAEIILQVKQDFKAHDSPVVVIGGSYGGMLAS WFRLKYPHIALGALASSAPILYFDDITSSDGYYNLVTKDFKEVSETCYKTIKKSWSAIQEIATLEGGLSLLGQIFKTCKPLNTSSELINYLESLYASAAQ YNDPLRNPVAAICRGIEGARVSATTISDDDKRPSPLLSKIVAGVVAISGVKQCYVNPPTVPSETTIGWRWQTCSEMVFPIGIGNNTMFPSEPFDLTAYSQ QCQFLYGVPPRPHWVTTSYGGHSIKLVLKRFGSNIIFSNGLKDPYSSGGVLEDISDSIVAVRTVNGSHCLDIVREHESDPDWLKAQRQLEIDILQGWISQ YHDDLHKGVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22860			Serine carboxypeptidase S28 fa...		Lus10008358 [exp]	0	1
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10008230 [exp]	1.4	0.9541
AT1G35710			Protein kinase family protein ...		Lus10003612 [exp]	2.0	0.9349
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10015889 [exp]	3.5	0.9221
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10024301 [exp]	5.8	0.9064
AT5G41140			Myosin heavy chain-related pro...		Lus10001481 [exp]	8.0	0.9200
AT5G48740			Leucine-rich repeat protein ki...		Lus10025926 [exp]	8.9	0.9152
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Lus10011426 [exp]	10.7	0.9054
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10036586 [exp]	11.3	0.9065
AT4G35240			Protein of unknown function (D...		Lus10016004 [exp]	14.7	0.9174
AT3G14470			NB-ARC domain-containing disea...		Lus10003571 [exp]	14.9	0.8927

Compare expression of checked genes

Lus10008358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.